Pairwise Alignments

Query, 368 a.a., GTP-binding signal recognition particle SRP54, G-domain (NCBI) from Rhodospirillum rubrum S1H

Subject, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

 Score = 54.7 bits (130), Expect = 5e-12
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 153 ILLVGPPGTGKTIAVAKLAARARLSGRAVGVITADSVRAGAQEQLAAFTRILEI----DL 208
           ILL+G  G+GKT + AKLA   +  G   G+I AD  R  A +QL   +  + +    D 
Sbjct: 103 ILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDE 162

Query: 209 KKARGPDGLATLVPNMQQQFGVIFIDSPGLNPFSQDDMDYLRALISAVPMDAALVLNAGT 268
            + + P  +        ++  VI ID+ G +   +  +  ++ +      +  +++  GT
Sbjct: 163 TRTKTPVEITKEGMEKLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGT 222

Query: 269 DPMEAMEIAEAF----AEVGASRILATRLDMARRLGGILAA 305
              +A   A+AF    +E+G+  IL T+LD + + GG L+A
Sbjct: 223 LGQQAKNQAKAFKESVSEIGS--ILVTKLDGSAKGGGALSA 261