Pairwise Alignments

Query, 942 a.a., CheA Signal Transduction Histidine Kinases (STHK) (NCBI) from Rhodospirillum rubrum S1H

Subject, 754 a.a., Sensor histidine kinase/response regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  230 bits (586), Expect = 3e-64
 Identities = 176/639 (27%), Positives = 299/639 (46%), Gaps = 56/639 (8%)

Query: 4   LLSEFLTETSESIATLDVELVNLERNPNDKGILSNIFRLVHTIKGTCGFLGLPRLESLAH 63
           LL  F  E    +  L   L+ LER+P     L +  R  H++KG    +G+    S+AH
Sbjct: 11  LLELFSLEAEAQVQVLSAGLLALERDPTQADYLESCMRAAHSLKGAARIVGVDAGVSVAH 70

Query: 64  AGENVLGKFRDGDLEVTPAAVTVILHTIDRIKEILGHLEANEVEPEGDDKDLKAHLNAFA 123
             E+ L   ++  L +    +  +L   D +  I      N V       D+ A++    
Sbjct: 71  VMEDCLVSAQEQRLVLGAEHIDALLQGTDLLMRIA--TPGNSVGAP----DIDAYVALMG 124

Query: 124 EGKQPSVAAMAPAPARAAGSGPAISEGGYPVAAELLAEVSEAVAKGKRAATEAELAAELA 183
               P+      AP   A   P++     P+  EL  +V    A         E A +  
Sbjct: 125 RLLDPN------APQAPAVVLPSVETAVEPLRIEL-PDVEPPPA--------TEPAPQRK 169

Query: 184 AELAAAEKAEQAVAAPVPEVIPEVKAATPVVQPAKPPAVTAAHDTNGPNGGGGGEQKEGS 243
                 E+  +  A  +  ++     +    Q  KP   T              +Q  G 
Sbjct: 170 RVTEGGERVLRVTAERLNSLLDLSSKSLVETQRLKPWLATMQRLKR--------QQSTGL 221

Query: 244 VASQSIRVNVELLENLMTLVSE-------LVLTRNQLLQMVRGSDDSEFVAPLQRLSHIT 296
            A + +  NV L ++ ++L ++        +L   Q L   + ++  EF     + + + 
Sbjct: 222 RALEEL--NVHLKDHALSLQAQEALGDARRLLAETQQLLAQKTAELDEFAWQASQRAQV- 278

Query: 297 TDLQEGVMKTRMQPIGNAWAKLPRIVRDLSIEMHKKIDLQMYGADTELDRQVLEMIKDPL 356
             L +  +  RM+P  +  +   R+VRDL   + K++ L++ G  T++DR VLE ++ PL
Sbjct: 279 --LYDTALACRMRPFADVLSGQARMVRDLGRSLDKQVRLEIEGEKTQVDRDVLEKLEAPL 336

Query: 357 THMVRNSGDHGLEFPDERAAAGKPETGVIKLNAYHEGGHIIIEISDDGRGLNLERIRAKA 416
           TH++RN+ DHG+E P++R  AGKP  GVI+L A H+ G +++E++DDG G++LER+R   
Sbjct: 337 THLLRNAVDHGIEPPEQRILAGKPAEGVIRLRASHQAGLLVLELADDGAGVDLERVRRSI 396

Query: 417 LSNGLATEAELENMTDQQIAQYIFRAGLSTAEKVTAVSGRGVGMDVVKTNIEKIGGTVEL 476
           +  GL+ E    +++++++  ++F  G S  +KVT VSGRGVG+D V+  + ++ G V L
Sbjct: 397 VERGLSPEQTAASLSEEELLTFLFLPGFSLRDKVTEVSGRGVGLDAVQHMVRQLRGAVVL 456

Query: 477 KTWPGKGSRFVIKIPLTLAIVSALIVEASGERFAIPQISVLELVRVTANSETTIEQINTA 536
           +   G+GSRF +++PLTL++V +L+VE   E +A P   +  + R+   +   I Q+   
Sbjct: 457 EQTAGEGSRFHLEVPLTLSVVRSLVVEVGDEAYAFP---LAHIERMCDLAPEDIVQVEGR 513

Query: 537 PVLRLRDRLMPLVSLSALLRLDDGDDEELGKTADATAGRRDETFIVVSQVGTYTFGIIVD 596
                  R + LV+ S LL               AT G      +VV +     +G+ V+
Sbjct: 514 QHFWHEGRHIGLVAASQLL------------NRPATQGSNQTLKVVVIRERETIYGVAVE 561

Query: 597 RVFDTEEIVVKPVAPILRHVSMFSGNTILGDGSVIMILD 635
           R      +VV P+   L  V   S   +L DGSV++I+D
Sbjct: 562 RFIGERTLVVLPLDERLGKVQDISAGALLDDGSVVLIVD 600



 Score = 82.4 bits (202), Expect = 1e-19
 Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 23/276 (8%)

Query: 678 GKDLKAVPLALVARLEEIETDKIEHSFGKPVVQYRGQLMPLVG----IHDEFTLAGEGRQ 733
           G +  A PLA + R+ ++  + I    G+    + G+ + LV     ++   T       
Sbjct: 485 GDEAYAFPLAHIERMCDLAPEDIVQVEGRQHFWHEGRHIGLVAASQLLNRPATQGSNQTL 544

Query: 734 PVLVFSDRDRTMGLVVDEIVDIVEDHLKVELRADLR-GVV-----GTAVVNGKATDIIDT 787
            V+V  +R+   G+ V+  +    +   V L  D R G V     G  + +G    I+D 
Sbjct: 545 KVVVIRERETIYGVAVERFIG---ERTLVVLPLDERLGKVQDISAGALLDDGSVVLIVDV 601

Query: 788 GYYLTKAFGDWFGTMKSDAFGEQKSAI----RVLLVDDSPFFRNLLTPLLSVSGYAVT-A 842
              L ++      T + +    Q  A     R+L+VDDS   R L   LL   GY V  A
Sbjct: 602 EDLL-RSVDKLLDTGRLERIARQNQAQAPRKRILVVDDSLTVRELQRKLLLNRGYDVAVA 660

Query: 843 VESAEKALELREKGHSFEAIISDIEMAGMDGFSFAAAIRADGRWGNLPLIALSSHATERD 902
           V+  +    LR +   F+ +I+DI+M  MDG    + +R D R  +LP++ +S    E D
Sbjct: 661 VDGMDGWNALRSE--DFDLLITDIDMPRMDGIELVSLLRRDNRLQSLPVMVVSYKDREED 718

Query: 903 LQRGREAGFDDYVAK--FDRDSLLEVLGQLVGGQPA 936
            +RG +AG D Y+AK  F  D+LL+ + +L+GG  A
Sbjct: 719 RRRGLDAGADYYLAKASFHDDALLDAVVELIGGARA 754