Pairwise Alignments

Query, 939 a.a., Alpha amylase, catalytic region (NCBI) from Rhodospirillum rubrum S1H

Subject, 538 a.a., alpha-amylase family glycosyl hydrolase from Rhodopseudomonas palustris CGA009

 Score = 52.4 bits (124), Expect = 8e-11
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 28  QVGYLRDLGVSHLYASPILKARPGSTHGYDIIDHGALNPELGGERGFAQLSEALAGAGLG 87
           ++GYL DLGV  ++ SPI  + P +  GYD+ D+  ++P  G    F  L       GL 
Sbjct: 40  RLGYLSDLGVDAIWLSPIFPS-PMADFGYDVADYVGIDPIFGTMDDFDALVLTAHARGLK 98

Query: 88  LIIDIVPNHMGIGAADNGWWLD 109
           +I+D+VPNH    +  + W+++
Sbjct: 99  VILDLVPNH---SSEQHPWFIE 117



 Score = 38.5 bits (88), Expect = 1e-06
 Identities = 54/190 (28%), Positives = 75/190 (39%), Gaps = 43/190 (22%)

Query: 715 EDYEAALEA--YGVGALTGEPAPKIRREVAELVTHLEGPGRTTALAQLTLRLTIPGVPDT 772
           E YE AL A  +    L     P++   V        GP +    A L L  T+ G P  
Sbjct: 309 ERYEQALPAGAWPNWVLGNHDRPRVASRV--------GPAQARVAAMLLL--TLRGTPTM 358

Query: 773 YQGTELW-------DDSLVDPDNRRPVDFALRRE--------KAADLAGVG--------- 808
           Y G EL         + + DP  +      + R+         A+D AG           
Sbjct: 359 YYGDELGMEQVEIAPEDVQDPFEKNVPGIGVGRDGCRTPMQWDASDQAGFSDVRPWLPLA 418

Query: 809 -GAAVEKLLADPAGAAKMLVLTR-LLALRRRLPDLFLEGGYEPLTVTGKAAGHVVAFLRR 866
             A  + +    A A  +L L R LL LRR LP L L G Y+PL     A G ++ + R 
Sbjct: 419 PNATQDNVANLRADAQSILNLYRALLRLRRALPQLAL-GAYQPLA----AEGELLLYRRH 473

Query: 867 HGEATLLVAV 876
           H   ++LVA+
Sbjct: 474 HQGQSILVAL 483