Pairwise Alignments

Query, 290 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score = 67.4 bits (163), Expect = 3e-16
 Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 30/256 (11%)

Query: 20  FFAYAALFLLAPTAFLVIGAFQNQE-----GGFTLDNLFNLAN-PTIVAAYWISIKVSAA 73
           F +   LFL  P   L+  +F   +     GGFT      L N  +++ A W SI V+  
Sbjct: 9   FMSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSINVAVF 68

Query: 74  SAIGGAVIGLLIAQAAVNGGLPGWIRPTLFTFSGVASNFAGIPLAFAFLATLGRTGLVTA 133
           SA    +IG L A A       G  +  +     V      I +A + LA     G    
Sbjct: 69  SATAATLIGSLTAVALFRYQFKG--KKVVSGMLFVVMMSPDIVMAISLLALFLVMGAK-- 124

Query: 134 LLKSWFGVNLYASGFNLLGFWGLTLTYLYFQIPLMVLIISPALEGLRREWREAAATLGAG 193
                            LGF+ L + ++ F +P +V+ +   L G   +  EAA  LGAG
Sbjct: 125 -----------------LGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAG 167

Query: 194 DIEYWRRIALPILWPSVLGATLLLFANAFGAIATAYALTGSSLNIVTILLYAQIRGDVLH 253
           +    ++I LP+  P+V    LL F  +   +  +  +TG +  I+ + +Y+ ++  +  
Sbjct: 168 EWVILKKIILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISP 227

Query: 254 DKNLGYALALGMIFIT 269
           + N   ALA  M+ ++
Sbjct: 228 EVN---ALATVMLVVS 240