Pairwise Alignments

Query, 314 a.a., Periplasmic binding protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 315 a.a., ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2

 Score = 54.7 bits (130), Expect = 3e-12
 Identities = 63/250 (25%), Positives = 99/250 (39%), Gaps = 35/250 (14%)

Query: 8   LLRRLLGGAAVIAALLGPPAALAA-------DPPPRRVVSINLCTDQLALLLAAPGQVRS 60
           LL  LLG A  +A     P  + +       +  PR  VS ++   Q+ L L    ++  
Sbjct: 8   LLPLLLGSAHALAEATHYPLTIQSCNRQVVFNEAPRHAVSHDINMTQMMLALGLKPRMVG 67

Query: 61  VSPLAA----KPELSMLADRARAIPANHGAAEEIFLMAPDLVLAG-----SFGAGNAVTM 111
            S ++      PE+  + D    + A + + E +     D   AG       G       
Sbjct: 68  YSGISGWKSVTPEMEKILDGLPELAAKYPSVETLLDANVDFFFAGWDYGMRVGGDLTPQT 127

Query: 112 LRGLGMAVEVFP---------PATSFDDIRKDLRRMGKLLGRSARAEALIGAFDRHLAEI 162
           L+ LG+ V             PA S +D   DLR +GK+     RA ALI      +A++
Sbjct: 128 LQPLGINVYELTESCAFVMKRPAASLEDTYNDLRNLGKIFDVQDRANALIAQMQAQVAQV 187

Query: 163 TKALSPARPRAAVI---EANGYTFGSGTLLDEAVRAAG----LDNLA---TRLGHSGMIA 212
            K L P +PR  +    E    T G   +    + AAG    LD+L    TR+    ++ 
Sbjct: 188 RKHLPPGQPRVFLYDSGEDRAMTSGRLGMPQALIDAAGGRNILDDLETSWTRVNWENVVE 247

Query: 213 LSLEALVMAD 222
            + E +V+ D
Sbjct: 248 RNPEVIVIVD 257