Pairwise Alignments

Query, 599 a.a., TPR repeat (NCBI) from Rhodospirillum rubrum S1H

Subject, 363 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 5/195 (2%)

Query: 326 GQLLAGQNRHDDAIAAYRGIESHDTLMLAAGLAEAESLRAQGKIDDAVVEFDKLAAHFPS 385
           G LL   NR  +A+A+Y            A    A  L   G++ +AV  +++  A    
Sbjct: 37  GILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLGRLPEAVESYEQALAIDRQ 96

Query: 386 RPDPLIEKGDLLRQDQRFAEAATAYSAAIARMGAPDPRHWAVYFGRGVAYERTDRWPLAE 445
           +P+    +G +LR+  R  +A  +Y  AIA + A   + WA     G A  +  R+  A 
Sbjct: 97  QPEVWNNRGIVLRKLGRLEDAIASYQQAIA-LAAHYAQAWA---NCGFALWQQGRYREAV 152

Query: 446 QDFQTALRLNPDQPFVLNYLGYSWLDNGINVDQAKQLIERAVAQRPKDGYIIDSLGWAHF 505
           + ++ ++ ++PDQ      LG  +L      DQA + +++A+A +P+        G A +
Sbjct: 153 RHYEQSVAIDPDQSSAWRQLGQIYLSVD-QPDQALRCLDQAIALQPQQATAWTWRGHALY 211

Query: 506 RLGEYAEAVGILERA 520
            LG+YA A+   E A
Sbjct: 212 NLGQYAAALTSYENA 226



 Score = 48.9 bits (115), Expect = 4e-10
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 421 DPRHWAVYFGRGVAYERTDRWPLAEQDFQTALRLNPDQPFVLNYLGYSWLDNGINVDQAK 480
           +PR+  ++  RG+  ER +RW  A   +  AL + P +   LN      L++   + +A 
Sbjct: 26  EPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIV-LEHLGRLPEAV 84

Query: 481 QLIERAVAQRPKDGYIIDSLGWAHFRLGEYAEAVGILERAIHETPDDATINDHLGDAYWM 540
           +  E+A+A   +   + ++ G    +LG   +A+   ++AI      A    + G A W 
Sbjct: 85  ESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWANCGFALWQ 144

Query: 541 VGRRLEARYQWERALSLADDADLSASIQKKLDTGLSPPSP-VVPRSAGRPAERQPTSAT 598
            GR  EA   +E+  S+A D D S++ ++     LS   P    R   +    QP  AT
Sbjct: 145 QGRYREAVRHYEQ--SVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQPQQAT 201



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 64/284 (22%), Positives = 106/284 (37%), Gaps = 40/284 (14%)

Query: 196 ALLQEQLGNKAKAGELYE-AYVKGGERPSL---RGVQLA--GGFFVRTGQAARARALAAD 249
           A++ E LG   +A E YE A     ++P +   RG+ L   G          +A ALAA 
Sbjct: 71  AIVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAH 130

Query: 250 YSQRFPDSLLLDNAVAGFA--------------EGGTPPAPEVGTAKDGMAELYYGTASL 295
           Y+Q +        A  GFA              E      P+  +A   + ++Y     L
Sbjct: 131 YAQAW--------ANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIY-----L 177

Query: 296 LADNDLQTATMFNRLALHLRPDFPLAQLLLGQLLAGQNRHDDAIAAYRGIESHDTLMLAA 355
             D   Q     ++ A+ L+P    A    G  L    ++  A+ +Y   E      L  
Sbjct: 178 SVDQPDQALRCLDQ-AIALQPQQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLL 236

Query: 356 GLAEAESLRAQGKIDDAVVEFDKLAAHFPSRPDPLIE--KGDLLRQDQRFAEAATAYSAA 413
            +    +L    + ++A+  +  +           +   +G +    Q +  A  A+  A
Sbjct: 237 SIQRGHTLAQLERYEEALASYAAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQA 296

Query: 414 IARMGAPDPRHWAVYFGRGVAYERTDRWPLAEQDFQTALRLNPD 457
           IA  G PD      ++ R   + R D+   A  D Q A+ L+PD
Sbjct: 297 IA--GNPDLAE--AWYNRAALHARLDQPVAAIADLQQAIALDPD 336