Pairwise Alignments

Query, 599 a.a., TPR repeat (NCBI) from Rhodospirillum rubrum S1H

Subject, 287 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 5/151 (3%)

Query: 412 AAIARMGAP-DPRHWAVYFGRGVAYERTDRWPLAEQDFQTALRLNPDQPFVLNYLGYSWL 470
           AA+A   AP D R W V     +   + D    A    + A +L+P +P +L  LG +  
Sbjct: 65  AALATQLAPNDFRVWLVLADASLRLNQLDP---AIAALEKAQKLSPREPAILFALGSARF 121

Query: 471 DNGINVDQAKQLIERAVAQRPKDGYIIDSLGWAHFRLGEYAEAVGILERAIHETPDDATI 530
             G N  +A   ++R +A +P     +  LG  +    +Y  A+   ++A+   PD    
Sbjct: 122 RQG-NYSEAASFLQRGLAIKPDSSGALFDLGNVYLIQKQYPPAIAAFQKAVQVKPDFWEA 180

Query: 531 NDHLGDAYWMVGRRLEARYQWERALSLADDA 561
            ++LG   +  G R +A   W RA+ L+ DA
Sbjct: 181 INNLGLVSYEQGDRNQALNYWNRAIELSKDA 211



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 412 AAIARMGAPDPRHWAVYFGRGVAYERTDRWPLAEQDFQTALRLNPDQPFVLNYLGYSWLD 471
           AA+ +     PR  A+ F  G A  R   +  A    Q  L + PD    L  LG  +L 
Sbjct: 97  AALEKAQKLSPREPAILFALGSARFRQGNYSEAASFLQRGLAIKPDSSGALFDLGNVYLI 156

Query: 472 NGINVDQAKQLIERAVAQRPKDGYIIDSLGWAHFRLGEYAEAVGILERAIHETPDDA 528
                  A    ++AV  +P     I++LG   +  G+  +A+    RAI  + D A
Sbjct: 157 QK-QYPPAIAAFQKAVQVKPDFWEAINNLGLVSYEQGDRNQALNYWNRAIELSKDAA 212



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 23/86 (26%), Positives = 38/86 (44%)

Query: 476 VDQAKQLIERAVAQRPKDGYIIDSLGWAHFRLGEYAEAVGILERAIHETPDDATINDHLG 535
           ++ A++    A    P D  +   L  A  RL +   A+  LE+A   +P +  I   LG
Sbjct: 58  IEFAQRQAALATQLAPNDFRVWLVLADASLRLNQLDPAIAALEKAQKLSPREPAILFALG 117

Query: 536 DAYWMVGRRLEARYQWERALSLADDA 561
            A +  G   EA    +R L++  D+
Sbjct: 118 SARFRQGNYSEAASFLQRGLAIKPDS 143



 Score = 23.9 bits (50), Expect = 0.009
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 291 GTASLLADNDLQTATMFNRLALHLRPDFPLAQLLLGQLLAGQNRHDDAIAAY-RGIESHD 349
           G+A     N  + A+   R  L ++PD   A   LG +   Q ++  AIAA+ + ++   
Sbjct: 117 GSARFRQGNYSEAASFLQR-GLAIKPDSSGALFDLGNVYLIQKQYPPAIAAFQKAVQVKP 175

Query: 350 TLMLA---AGLAEAESLRAQGKIDDAVVEFDKLAAHFPSRPDPLIEKGDLLRQDQRFAEA 406
               A    GL   E    QG  + A+  +++         +P++ K  L+ Q  +  EA
Sbjct: 176 DFWEAINNLGLVSYE----QGDRNQALNYWNRAIELSKDAAEPVLAKAVLVYQQGQTEEA 231

Query: 407 ATAYSAAIAR 416
                 A+ +
Sbjct: 232 VRLAQQALGK 241