Pairwise Alignments

Query, 599 a.a., TPR repeat (NCBI) from Rhodospirillum rubrum S1H

Subject, 658 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

 Score = 59.3 bits (142), Expect = 5e-13
 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 6/255 (2%)

Query: 304 ATMFNRLALHLRPDFPLAQLLLGQLLAGQNRHDDAIAAYRGIESHDTLMLAAGLAEAESL 363
           A  + R A+   P+       L   +  Q+R D+AIA Y      D    A+ +  A +L
Sbjct: 77  AEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIRIDRDHRASRIGLANAL 136

Query: 364 RAQGKIDDAVVEFDKLAAHFPSRPDPLIEKGDLLRQDQRFAEAATAYSAAIARMGAPDPR 423
             +   + +V  F+      P+ P PL   G  L + +R+ EA      ++    +  P 
Sbjct: 137 HEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAVAVILKSLELQISFAPS 196

Query: 424 HWAVYFGRGVAYERTDRWPLAEQDFQTALRLNPDQPFVLNYLGYSWLDNGINVDQAKQLI 483
           H A+    G A+   + +  A +  +TA+ L+P   +  N +  S+L     +D+A + +
Sbjct: 197 HTAL----GEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLN-RIDEAHEHL 251

Query: 484 ERAVAQRPKDGYIIDSLGWAHFRLGE-YAEAVGILERAIHETPDDATINDHLGDAYWMVG 542
            R +   PKD      LG ++F   + + +A+ +  +A+      A   +++G      G
Sbjct: 252 LRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHDHG 311

Query: 543 RRLEARYQWERALSL 557
              +A   + +AL L
Sbjct: 312 DLEDAIGNFRKALEL 326



 Score = 42.0 bits (97), Expect = 8e-08
 Identities = 55/246 (22%), Positives = 95/246 (38%), Gaps = 8/246 (3%)

Query: 316 PDFPLAQLLLGQL---LAGQNRHDDAIAAYRGIESHDTLMLAAGLAEAESLRAQGKIDDA 372
           P  PL  LL  +    L    + D+A A    + S +  ++ A  A       +GK  DA
Sbjct: 18  PKHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRNPTLVFANHARGLVAMHEGKFADA 77

Query: 373 VVEFDKLAAHFPSRPDPLIEKGDLLRQDQRFAEAATAYSAAIARMGAPDPRHWAVYFGRG 432
                K     P   + +      +    R  EA   Y  AI      D  H A   G  
Sbjct: 78  EAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIRI----DRDHRASRIGLA 133

Query: 433 VAYERTDRWPLAEQDFQTALRLNPDQPFVLNYLGYSWLDNGINVDQAKQLIERAVAQRPK 492
            A    +    +   F+ A++  P+ P  L++LG + ++     ++A  +I +++  +  
Sbjct: 134 NALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECK-RYNEAVAVILKSLELQIS 192

Query: 493 DGYIIDSLGWAHFRLGEYAEAVGILERAIHETPDDATINDHLGDAYWMVGRRLEARYQWE 552
                 +LG A   +  Y EA+   + AI   P D   ++ + D+Y  + R  EA     
Sbjct: 193 FAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHEHLL 252

Query: 553 RALSLA 558
           R + +A
Sbjct: 253 RVIEIA 258



 Score = 25.4 bits (54), Expect = 0.008
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 300 DLQTATMFNRLALHLRPDFPLAQ-------LLLGQLLAGQNRHDDAI 339
           DL+ A    R AL LRP++P A+       LL G L  G   H+  +
Sbjct: 312 DLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRL 358