Pairwise Alignments

Query, 334 a.a., Periplasmic binding protein/LacI transcriptional regulator (NCBI) from Rhodospirillum rubrum S1H

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  112 bits (280), Expect = 1e-29
 Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 13/297 (4%)

Query: 1   MKKLLLTACAAAALLSASAAMAADAPKARIAVLMYGNKAEFVQLMERYGKEHPAVKAGIA 60
           MKKL  T   +AALLS S +  A A      VL   N   FV + +  G E  A + G  
Sbjct: 3   MKKL--TTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKD--GAEAKAKELGYN 58

Query: 61  EVTFYDGRYDAAVQNDQAQMAINTKQDAIVVNPMDYEANIDIATNAKMAGIPVVVTNARL 120
            +   D + D + +    +        AI++NP D +A  +    A  + IPV+  +   
Sbjct: 59  LIVL-DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA 117

Query: 121 NTDEMTAEVVSDDVLGGYLEAKDVLTKLGCKGNVVIIEGPKGGSGEIQRGQGNEKALAEC 180
           +  E+ + + SD+V+GG +    +  K+G    V+ +EG  G S   +RG+G   A+   
Sbjct: 118 SRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV--- 174

Query: 181 PAGAVKVLERKTANWSRAEALDLMQNWLSKHPGKINGVIGQNDEMALGAIEAIKAADLNV 240
               +++L  + A++ R + L++M+N L+ +P  +  V  QNDEMALGA+ AI+A+    
Sbjct: 175 KGSKMQLLASQPADFDRTKGLNVMENLLAANP-DVQAVFAQNDEMALGALRAIQASG--- 230

Query: 241 KDFAIAGIDGVTDALHAVKAGEMTSILQDARGQIQG-SIDVALRAVKGPDYKPMSPI 296
           K   I G DG  D + AV+ G++ + +      I    I+ A + +KG   +   P+
Sbjct: 231 KSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPV 287