Pairwise Alignments

Query, 454 a.a., tRNA/rRNA cytosine-C5-methylase (NCBI) from Rhodospirillum rubrum S1H

Subject, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

 Score =  153 bits (386), Expect = 1e-41
 Identities = 125/425 (29%), Positives = 190/425 (44%), Gaps = 35/425 (8%)

Query: 27  IASAFVRARRFMGSKDRRAVTALAWSTLRHRARLSWLIDRFGGTP-KARALVIAHLLVVE 85
           +++A   A++ +  +D   +  + +  LR   RL  +     G P K +  V   L++V 
Sbjct: 21  LSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQALMGKPLKGKQRVFHFLILVG 80

Query: 86  RQSAEDVRMLFITRAQHAPQPLTDAEERLVDGLAGKPLEFREMPADV-----------RL 134
                 +R+          +   D +   + GL    L   +   +            R 
Sbjct: 81  LYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQRDQEGLDAQATSHDAGRY 140

Query: 135 EVPDWLPPLLEPLFGERLEDELRALQAEAPLDLRVNALKSDRESARLALAREQVDTRPGA 194
             P WL  LL+  + E+ +  + A  ++AP+ LRVN     R   +  L +  + T P A
Sbjct: 141 GHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHA 200

Query: 195 LSPCALRAEGRPNVAITAPFCDGLVEVQDEGSQMVALLCAVAPGMSVLDLCAGAGGKTLA 254
            +  AL  E   +V     F +G V VQD  +Q+     A   G  +LD CA  GGKT  
Sbjct: 201 QAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAH 260

Query: 255 LAAGMENKGTLVATDISEGRLARAQTRLQRAGVHNVTRKVLDPETR---KWLKRRKASFD 311
           +      +  +VA D  E RL R +  LQR     +T +V+  + R   +W +  +  FD
Sbjct: 261 ILERTP-ESQVVAIDCDETRLKRVRENLQRL---ELTAQVICGDARYPQQWWQGEQ--FD 314

Query: 312 VVLVDAPCSGTGTWRRNPDARWKLTPDTISALNAEQSALLDRAAALVKPGGRLVYATCSL 371
            +L+DAPCS TG  RR+PD +W    D I+AL   Q  +LD     +KPGG LVYATCS+
Sbjct: 315 RILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSI 374

Query: 372 LPAENEAQIAAFLERRDDYRALPVAETWAKVSPAPYPGAADVSWLRLTPASHGTDGFFVS 431
            P EN  Q+ AFLER  D R +         S    PG       ++ P     DGF+ +
Sbjct: 375 TPQENRLQVKAFLERTPDARLVG--------SEPAQPGR------QILPGEEAMDGFYYA 420

Query: 432 ILERQ 436
           +L +Q
Sbjct: 421 VLSKQ 425