Pairwise Alignments

Query, 454 a.a., tRNA/rRNA cytosine-C5-methylase (NCBI) from Rhodospirillum rubrum S1H

Subject, 486 a.a., NOL1/NOP2/sun family putative RNA methylase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (410), Expect = 2e-44
 Identities = 133/447 (29%), Positives = 205/447 (45%), Gaps = 50/447 (11%)

Query: 13  LLVDIDATNRPADGIASAFVRARRFMGSKDRRAVTALAWSTLRHRARLSWLIDRFGGTPK 72
           L  +I +  +PAD + + + R  +  GSKDR+ +    +S  R      W   +  G  +
Sbjct: 66  LFDEILSAKQPADRVLANYFREHKKHGSKDRKVIRESLFSLFRW-----WGWFKAAGDHQ 120

Query: 73  ARALVIAHL---LVVERQSAEDVRMLFITRAQHAPQPLTDAEERL----VDGLAGKPLEF 125
             A   A L    ++E    +D     I +A H     T   +RL    V+ L  K    
Sbjct: 121 QAAHFFAMLSASALLEAHPWQD-----IAQAWHELSQSTHDYQRLQSIPVNNLTDKLALV 175

Query: 126 REMPADVRLEVPDWLPPLLE---PLFGERLEDELRALQAEAPLDLRVNALKSDRESARLA 182
           R++   V LE+ D LP       P+  +R  + + A+ +  P+  R  ++ S    ++L 
Sbjct: 176 RQLFPQVVLELTDLLPEWFWQVCPIDAKRRPNLIEAMSSRPPIWGRAQSINSQTAVSQLQ 235

Query: 183 LAREQVDTRPGALSPCALRAEGRPNVAITAPFCDGLVEVQDEGSQMVALLCAVAPGMSVL 242
               +    P       L ++      IT  + +G +E+QD  SQ++  +CA  P     
Sbjct: 236 ALGIEASLSPFFEDAINLGSKSMNLNEITL-YKEGNIEIQDLASQVIGQICAPEPWQHWW 294

Query: 243 DLCAGAGGKTLALAAGMEN---------KGTLVATDISEGRLARAQTRLQRAGVHNVTRK 293
           D C+GAGGKTL L + M+          +G++V++DI    L     R QRA    ++  
Sbjct: 295 DACSGAGGKTLQLRSLMQTAATKQHTPLQGSIVSSDIRANALEELSKRAQRAQFDGIS-- 352

Query: 294 VLDPETRKW----LKRRKASFDVVLVDAPCSGTGTWRRNPDARWKLTPDTISALNAEQSA 349
                  +W    L      FD VLVDAPCS TGTWRRNPD RW  T D +      Q  
Sbjct: 353 -----IARWRSDALPVAANYFDGVLVDAPCSCTGTWRRNPDMRWLDTLDAVMDKATLQLD 407

Query: 350 LLDRAAALVKPGGRLVYATCSLLPAENEAQIAAFLERRDDYRALPVAETWAKVSPAPYPG 409
           +L R++  VK GG L+YATCSL P ENE  ++AFL++  ++  +P+          P+ G
Sbjct: 408 ILSRSSQAVKAGGTLIYATCSLSPVENEEVVSAFLQQHPEFNLVPIRH--------PFTG 459

Query: 410 AADVSWLRLTPASHGTDGFFVSILERQ 436
                 L + P    TDG FV+ ++R+
Sbjct: 460 -EQTEMLTVWPFEANTDGMFVARMQRK 485