Pairwise Alignments

Query, 576 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  232 bits (592), Expect = 3e-65
 Identities = 156/480 (32%), Positives = 252/480 (52%), Gaps = 20/480 (4%)

Query: 100 HLSKLPLGFFTFQRTGALTTTVAENVKMVEEMFTKVVNEIVAGFTLPLFIGILLVVIDWR 159
           HL  LPL +F  ++TG +   V E  +         + + + G TL L + ++ V +   
Sbjct: 247 HLVGLPLTYFKQRQTGQIIARVREMAQ---------IRQFLTGSTLMLLLDLIFVTVFLA 297

Query: 160 MGLAAVASVP-------LAFAVLRLTQGRFMRLSAK-RVDVHAEVSGRLLEYIDGLRVIR 211
           +     +++        + + VL L  G  +R   +   +  A  +  L E + G+  I+
Sbjct: 298 VMFHYASTLTWLVIGSLVIYFVLWLIAGPLIRKKVESEYESDANATTFLTEAVTGIETIK 357

Query: 212 GYGLAGAKFASLRDSLDTQRRVSVALEIQGGLGIMAMAVVLEMGFIALLMVGAFAMLGGA 271
                       +  L  Q   S   +  G +   A+A+V ++    LL  G  A+L G 
Sbjct: 358 TTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKLTAALLLWWGVSAVLKGE 417

Query: 272 LSPASYLMAMVLAQKFYAPITRSLMLLVDIKYLSLALKRVQTLLNAPRLPEPVE-PKVPS 330
           ++P   +   +LA     P+ R   +  D ++  +AL+RV  +L+ PR         VP 
Sbjct: 418 ITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPRENSKQGLASVPE 477

Query: 331 -NNAIVFDAVSFRYDEAGDEPALSEVTFTLREGTTTALVGPSGAGKSTVAHLIARFHDVT 389
            +  I F  + FRY +   E  L+ ++  ++ G    + GPSG+GKST+  L+ R +   
Sbjct: 478 LDGGIEFSNIRFRYHQDAPE-VLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQ 536

Query: 390 SGAVRIGGVDLRDMASDELMRRVSMVLQDVHLFDDTVANNIRIGRSDASDEDVVAAARHA 449
            G V + G+DL       L R +S+VLQ+  LF  +VA+NIR+ +  ASDE++  AA+ A
Sbjct: 537 HGQVLVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASDEEIRHAAQLA 596

Query: 450 QCHAFIEALPQGYQAPIGEGGAWLSGGQKQRLSIARALLKDAPIVLLDESTASLDPECEA 509
              AFIE LP G+  P+GE GA LSGGQ+QR+++ARALL +  I+LLDE+T++LD   EA
Sbjct: 597 GALAFIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEATSALDYNSEA 656

Query: 510 AFHQAFKILAAGKTVLVIAHRLHTVVNADQIVVMERGRVVQTGTHGDLIASPGLYRTLWT 569
           +       +  G+TV+ IAHRL+T+ +AD I V+++G+V ++GTH +L+A  GLY  LWT
Sbjct: 657 SIMSNMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESGTHEELLAQQGLYAKLWT 716