Pairwise Alignments

Query, 688 a.a., type II secretion system protein E (NCBI) from Rhodospirillum rubrum S1H

Subject, 575 a.a., MSHA biogenesis protein MshE from Vibrio cholerae E7946 ATCC 55056

 Score =  348 bits (894), Expect = e-100
 Identities = 204/554 (36%), Positives = 309/554 (55%), Gaps = 12/554 (2%)

Query: 133 LGDQLLAGGLISRDQMRVAHIEQKRSGAPLGQVLVDLGFITDGVLAEVLAQSSGHDRFDA 192
           LGD L+  G++S  Q+  A   QK +G  LG  L+ LGF+++  L   LAQ       D 
Sbjct: 10  LGDLLVEEGIVSEAQLEQALNAQKNTGRRLGDTLISLGFLSETQLLNFLAQQLSLPVIDL 69

Query: 193 ASTLADPAALAPLPEREARRLRVFPVGLRGSLLRLAMVDPLDVVAIDEVRRHYGRDVRIE 252
           +    D  A+  LPE  ARRLR   +G  G  LR+AM DP D+ A  E   +   D   E
Sbjct: 70  SRAHVDIDAVPLLPEVHARRLRALVIGRSGDTLRIAMSDPADLFA-QEALLNQLPDYGFE 128

Query: 253 PVVSSEAEIAQAIDRSYGHVLALDGVLRELETLGAAGADPESL------RDTDSHPVVRL 306
            V++ E ++    DR Y        ++   E L A     +S        D+D   VV+L
Sbjct: 129 FVIAPEKQLVDGFDRYYRRTKE---IVSFAEQLHAEHKTNDSFDFEITDSDSDEVTVVKL 185

Query: 307 VNALLLDAVKRRASDLHFEPQGAFLRVRLRIDGTLSQTLIFHKQYWPAVAQRLKILAGMN 366
           +N+L  DA++  ASD+H EP    LR+R RIDG L +TL+       A+  RLK++A ++
Sbjct: 186 INSLFEDAIQVGASDIHIEPDANVLRLRQRIDGVLHETLLHEVNIASALVLRLKLMANLD 245

Query: 367 IADRLGPQDGRFSMAIAHRKIDFRASVIPTVHGENMVLRVLDRSATPLKLEQLALAHGTL 426
           I+++  PQDGRF++ +  + +D R S +P  HGE++V+R+L++SA   KLE+  +    L
Sbjct: 246 ISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQHGESVVMRLLNQSAGVRKLEESGIPPHLL 305

Query: 427 DPLELLVRRPEGLLLVTGPTGSGKTTTLYALMDHISGPEITIVTLEDPVEYDLPLLRQTQ 486
             L   ++RP G++LVTGPTGSGKTTTLY  ++ ++     I+T EDPVEY +  + Q Q
Sbjct: 306 LRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAEDPVEYRISRINQVQ 365

Query: 487 VREGARLGFADGIRALLRQDPDVMLVGEIRDADTAAMALRAAMTGHQVYATLHANDAPSA 546
           V     L F+  +R  LRQDPD++LVGE+RD +T  + LRAA+TGH V +TLH NDA  +
Sbjct: 366 VNPKINLDFSTLLRTFLRQDPDIILVGEMRDQETVEIGLRAALTGHLVLSTLHTNDAVDS 425

Query: 547 LPRLMDLGLRPGLLAGSLIGVLAQRLVRRLCPHC--RQSYRASPVECKILGLDATDPPEI 604
             RL+D+G    L+A ++  V+AQRLVR++CP C        +  +  +         + 
Sbjct: 426 ALRLIDMGAPGYLVASAVRAVVAQRLVRKVCPDCSGHDEVDEARRQWLVTRFPNQAAAKF 485

Query: 605 FRARGCEACGQTGYHGRVPISELLSISPEIDDLIASAAPLAEIRALATRQGYRPMLDDGA 664
            R RGC+ C  TGY GR+ + E+L +   + D + +   +A  +A  +   Y+P+L    
Sbjct: 486 TRGRGCQNCNLTGYRGRIGVFEMLELDQPMMDCLRANDAVAFSKAARSNTDYKPLLASAM 545

Query: 665 RLVCEGVIDVAALM 678
            L  +G++ +  +M
Sbjct: 546 ELALQGIVSLDEVM 559