Pairwise Alignments

Query, 372 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

Subject, 366 a.a., DNA polymerase III subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score =  254 bits (650), Expect = 2e-72
 Identities = 138/373 (36%), Positives = 225/373 (60%), Gaps = 8/373 (2%)

Query: 1   MKLTIERTALLKSLGHVQSVVERRNTIPILSNVRMETGESGFSLNATDMDLEIVETVTAT 60
           MK TIER+ L+K L  V   +  R ++PIL N+ ++  E+  S+ ATD+++E++  VT  
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  -TLAPGATTAPAHTLYDIVRKLPDGSQVELSYDGNDGQLVLKAGRSRFSLSCLPVEDFPA 119
                G+ T PA    DI R LPD + + +  +G+  ++ +++GRSRFSL+ LP  DFP 
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLEGD--RIQVRSGRSRFSLATLPASDFPN 118

Query: 120 LSAGEFSHSFSLPATDLRGLIDRTRFAISTEETRYYLNGIYLHATESAGVPVLRAVATDG 179
           +   +     SL   +LRGLI++T+F+++ ++ RYYLNG+      +     LR+VATDG
Sbjct: 119 IEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTT----LRSVATDG 174

Query: 180 HRLARAEIPLPAGAAGMPGVIVPRKTVGELRKLIEETGMDITVGLSEQKIRFDFDETRLT 239
           HR+A A+  L A  A    +IVPRK V EL KL++     + + +    +R + +    T
Sbjct: 175 HRMAVAQAQLGADFA-QKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFT 233

Query: 240 SKLIDGTFPDYERVIPTENDKVLEVDCKLFAQAADRVSAISTEKSRAIKVAVAKGTMTLS 299
           SKL+DG FPDY RV+P    K L+  C+   QA  R + +S EK R ++V +A   M ++
Sbjct: 234 SKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRIT 293

Query: 300 ASSPDAGSAVEEIEAAYQSTSLEIGFNSRYLLDILGQVEGGSVRLTFADAASPTVIRDVA 359
           A++P+   A E ++ +++   +EIGFN  Y+LD+L  +   +VR++ +DA +  ++ +V 
Sbjct: 294 ANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDANASALVENVD 353

Query: 360 DASAVYVLMPMRV 372
           D SA+YV+MP+R+
Sbjct: 354 DDSAMYVVMPIRL 366