Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 440 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  331 bits (849), Expect = 3e-95
 Identities = 176/432 (40%), Positives = 263/432 (60%), Gaps = 9/432 (2%)

Query: 64  VVTDSRQTIRAGWLIILVAFGGLGLWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIK 123
           ++ D     R G+L++LV FG  G WAA APL S+  APG + V+S RKTVQHLEGGI++
Sbjct: 15  LLVDDTPVRRVGYLMLLVTFGLFGGWAALAPLDSSALAPGVVTVKSYRKTVQHLEGGIVR 74

Query: 124 EILVKEGDRVHQGDPLIRLETTQALASAAVVSNQFETYQALEARLVAERDEQKTITFPPD 183
           E+ V +GD V  GD L+ L+ TQA +      +Q      L+ARL AERD        P+
Sbjct: 75  ELRVHDGDLVKTGDVLLVLDNTQARSEMETTRSQLIAALQLQARLEAERDAL------PE 128

Query: 184 LIAVAKLKPETAEILQAQQQQ---FDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSK 240
            +AV  L P    + +A+  +   F  R  S+ G++ + +K I Q  ++I G K    SK
Sbjct: 129 PLAVPALDPADPRVQEARDSEARIFQTRRTSLLGEIGLQEKTIGQIEEQIRGFKAIIASK 188

Query: 241 KRQLEIFQDEIVGLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAE 300
           +     +Q+EIV LR LLA+GY  + R+   ER ++RL+ E+    S +A+A   + EA 
Sbjct: 189 QALAASYQEEIVDLRALLAEGYVDKQRLREQERSLSRLQTEIAESQSEIAQAHVHIDEAR 248

Query: 301 LQIIQTRQQFREDVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTL 360
           L+I+Q ++ F  +V G L + +TK+ ELRER     D   RT +LA ++G++  + VHTL
Sbjct: 249 LKILQLKKTFASEVAGLLGDARTKVYELRERLATLQDRDQRTDILAPESGMVMGMTVHTL 308

Query: 361 GGIIKPGETLMEIVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLS 420
           G ++ PG  L++IVP ++ L+IEAQ+SP DID +  G   ++RFSAF S T P+I+G L 
Sbjct: 309 GAVVSPGTALLDIVPANEELIIEAQVSPMDIDRIALGKLADIRFSAFKSSTTPVIEGQLV 368

Query: 421 QVSADRFVNERDSSSYYKARIEVSDEELAKLGGLALRAGMPVDVMIKTGERTVLHYFLKP 480
           Q+SADR +N+   ++YY AR+ ++D+    LG L L  GMPV+V++ TG RT+L Y ++P
Sbjct: 369 QISADRLINKDTGTAYYLARVALTDKGRQALGNLTLVPGMPVEVLVNTGARTLLQYLIQP 428

Query: 481 LEDALFHGLIEE 492
             +     LIE+
Sbjct: 429 ASNVFARSLIED 440