Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 444 a.a., hemolysin D from Pseudomonas fluorescens FW300-N2E3

 Score =  275 bits (704), Expect = 2e-78
 Identities = 146/420 (34%), Positives = 237/420 (56%), Gaps = 2/420 (0%)

Query: 73  RAGWLIILVAFGGLGLWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEILVKEGDR 132
           R GW++ +V  G   LWA+ APL   +   GT+VV   RK VQ + GG++  ILV+EG+ 
Sbjct: 27  RLGWILAVVGAGSFFLWASLAPLDQGIPVQGTVVVSGKRKAVQSMSGGVLSRILVREGEA 86

Query: 133 VHQGDPLIRLETTQALASAAVVSNQFETYQALEARLVAERDEQKTITFPPDLIAVAKLKP 192
           V QG PL RL+ TQ  A    +  Q+    A  AR  +ERD  K ++FP +L       P
Sbjct: 87  VKQGQPLFRLDQTQVEADVQSLQAQYRMAWASLARWQSERDNLKQVSFPAELSNDPD--P 144

Query: 193 ETAEILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSKKRQLEIFQDEIV 252
             A +L+ Q+Q F  R ++ + + A L+  I  +  ++ G++  R     Q E  + ++ 
Sbjct: 145 RLALVLEGQRQLFSSRREAFDREQAGLRANIEGATAQLAGMRRARTDLTAQAESLRQQLT 204

Query: 253 GLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAELQIIQTRQQFRE 312
            L+ L   GY PR R++  +R++++++ ++  ++    R EQ + E  L++ Q  +++++
Sbjct: 205 NLQPLADNGYIPRNRLMEFQRQLSQVQQQLAQNSGESGRVEQGILETRLKLQQHSEEYQK 264

Query: 313 DVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTLGGIIKPGETLME 372
           +V  QL + Q K   L ++ T A   L ++ ++A   G+  NL VHT G +I+PGETL+E
Sbjct: 265 EVRSQLADAQLKSLTLEQQLTSAGFNLQQSEIVAPADGIAVNLGVHTEGAVIRPGETLLE 324

Query: 373 IVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQVSADRFVNERD 432
           IVP+  RL +E  +    ID V   +  ++ F+AFN    P + G +S +SAD+ V+E+ 
Sbjct: 325 IVPQGTRLEVEGHLPVNLIDKVGSHLPVDILFTAFNQSKTPRVPGEVSLISADQMVDEKT 384

Query: 433 SSSYYKARIEVSDEELAKLGGLALRAGMPVDVMIKTGERTVLHYFLKPLEDALFHGLIEE 492
              YY  R  VSD  + KL GL ++ GMP ++ ++TGER++L+Y  KPL D     L EE
Sbjct: 385 GVPYYVLRSSVSDVAMEKLNGLVIKPGMPAEMFVRTGERSLLNYLFKPLLDRAGSALTEE 444