Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 455 a.a., hemolysin secretion protein D from Pseudomonas fluorescens FW300-N2E3

 Score =  203 bits (516), Expect = 1e-56
 Identities = 128/429 (29%), Positives = 225/429 (52%), Gaps = 8/429 (1%)

Query: 64  VVTDSRQTIRAGWLIILVAFGGLGLWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIK 123
           ++ D+ + +R     I+  F  L LWA  A +       G  +  S  + +Q+LEGGI+ 
Sbjct: 33  LIEDAPRVVRLTIWAIIGFFLFLLLWANFAVIDEVTKGDGKAIPSSKLQKIQNLEGGIVA 92

Query: 124 EILVKEGDRVHQGDPLIRLETTQALASAAVVSNQFETYQALEARLVAERDEQKTITFPPD 183
           E+ V+EG  V  G PLIRL+ T+  ++         +      RL AE D+ + ++FP D
Sbjct: 93  ELFVREGQIVEAGAPLIRLDDTRFKSNVGETEADRLSMLLRVERLSAEVDD-RPLSFPDD 151

Query: 184 LIAVAKLKPETAEILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSKKRQ 243
            +   K  P  A    +++  ++ R + +  +V  LQ+++ Q +QE+     ++   +  
Sbjct: 152 AM---KAVPGQAA---SEKSLYESRRQQLHDEVGGLQEQLIQKQQELREFTSKQAQYRSG 205

Query: 244 LEIFQDEIVGLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAELQI 303
           L + + EI     L+A+G      +L ++R      G++   T ++ RAE A+ E + +I
Sbjct: 206 LALQRQEINMSEPLVAQGAVSPVEVLRLKRAEVETRGQLDATTLAIPRAESAIKEVQRKI 265

Query: 304 IQTRQQFREDVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTLGGI 363
            +TR +FR + + QL E +T L++ +  G    D +SRT++ +   G+++ L V+T+GG+
Sbjct: 266 DETRGKFRSEALTQLNEARTDLNKAKATGKALEDRVSRTLVTSPVRGIVKQLLVNTIGGV 325

Query: 364 IKPGETLMEIVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQVS 423
           I+PG  ++EIVP DD L++EA+I P+DI  + PG +  V+F+A++      +   L Q+ 
Sbjct: 326 IQPGSDMVEIVPLDDTLLVEAKIRPQDIAFLHPGQEAIVKFTAYDYTIYGGLKAKLEQIG 385

Query: 424 ADRFVNERDSSSYYKARIEVSDEEL-AKLGGLALRAGMPVDVMIKTGERTVLHYFLKPLE 482
           AD   +E   ++YY  ++      L      L +  GM   V I TG++T+L Y LKP+ 
Sbjct: 386 ADTITDEDKKTTYYMIKLRTERSHLGTDEKPLLIIPGMVASVDIITGKKTILSYLLKPII 445

Query: 483 DALFHGLIE 491
            A    L E
Sbjct: 446 KARAEALHE 454