Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 454 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N1B4

 Score =  189 bits (481), Expect = 1e-52
 Identities = 131/453 (28%), Positives = 227/453 (50%), Gaps = 18/453 (3%)

Query: 35  AQTPAKASAKMPGDTTPARWTEGM-----LSIPKVVTDSRQTIRAGWLIILVAFGGLGLW 89
           AQTP  A+    G  + +  +E M      S+      SR T+   WL   +    L +W
Sbjct: 3   AQTPDSAARSYFGSFSKSAESEFMPETAGASLQDSPRWSRITV---WLAAALLITAL-VW 58

Query: 90  AATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEILVKEGDRVHQGDPLIRLETTQALA 149
           A  A L       G  +  S  + +Q+LEGGI+ EI V+EG  V++GD L+RL+ T+ L+
Sbjct: 59  AKFAVLQEVTTGEGKAIPSSKIQVIQNLEGGIVTEIFVREGQMVNKGDTLLRLDDTRFLS 118

Query: 150 SAAVVSNQFETYQALEARLVAERDEQKTITFPPDLIAVAKLKPETAEILQAQQQQFDERH 209
           +            A   RL AE  E +      ++IA A   P+ AE    ++  +++R 
Sbjct: 119 NKGESEADRYALTAQVERLSAEA-EGRPFKLSAEVIAKA---PQVAE---DERSLYEQRQ 171

Query: 210 KSIEGQVAILQKRIAQSRQEIEGLKVQRQSKKRQLEIFQDEIVGLRELLAKGYTPRTRIL 269
           + +  +   L +++ Q  QE+   + ++      L + Q E+     L+  G      IL
Sbjct: 172 RRLASEQRTLTEQLRQKTQELAEFRSKQGQFSSSLALLQQEMNMSAPLVGTGAVSPVEIL 231

Query: 270 AMEREMTRLEGEVGTDTSSMARAEQAVGEAELQIIQTRQQFREDVVGQLREVQTKLSELR 329
            ++R    + G +   T ++ RAE A+ E + +I ++ Q FR D   +L E +T LS++ 
Sbjct: 232 RLKRSAVEIRGSLNATTLAIPRAESAINEIKSKIDESEQSFRSDAAKELNEKRTDLSKIT 291

Query: 330 ERGTVATDVLSRTVLLASQAGVIQNLAVHTLGGIIKPGETLMEIVPEDDRLVIEAQISPR 389
                  D ++RT +++   G+I+ L V+T+GG+++PG  ++EIVP +D L+IEA++ P+
Sbjct: 292 ATSIAIDDRVTRTTVVSPVHGIIKMLKVNTIGGVVQPGNDMVEIVPLEDNLLIEAKVRPQ 351

Query: 390 DIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQVSADRFVNERDSSSYYKARIEVSDEEL- 448
           D+  + PG    V+FSA++      +   L  + AD   +++  +S+Y  ++      L 
Sbjct: 352 DVAFLHPGQKAMVKFSAYDYTIYGGLSAKLELIGADTITDDK-GNSFYLIQVRTDKNHLG 410

Query: 449 AKLGGLALRAGMPVDVMIKTGERTVLHYFLKPL 481
             +  L +  GM   V I TGE++VL Y LKP+
Sbjct: 411 GDVKPLLIIPGMVATVDIITGEKSVLDYLLKPV 443