Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  186 bits (472), Expect = 1e-51
 Identities = 121/422 (28%), Positives = 220/422 (52%), Gaps = 21/422 (4%)

Query: 76  WLIILVAFGGLGLWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEILVKEGDRVHQ 135
           W +  +AF  L +WA  A L       G ++  S  + +Q L+GGI+KE+ V+EG  V +
Sbjct: 33  WALAALAFSFL-VWAYFAELDRVTTGTGKVIPSSQVQVIQSLDGGIMKELYVREGMTVTK 91

Query: 136 GDPLIRLETTQALASAAVVSNQFETYQALEARLVAERDEQKTITFPP------DLIAVAK 189
           G PL+R++ T+  +  A    Q +   +L+A ++  R E  +IT         + + +AK
Sbjct: 92  GQPLVRIDDTRFRSDFA---QQEQEVYSLQANVIRLRAELNSITISDVAADWREQVKIAK 148

Query: 190 ----LKPETAE----ILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSKK 241
                 PE  E    +++ Q+ ++  R  ++  Q+ IL ++I Q +QE E L  +  +  
Sbjct: 149 QPLQFPPELTESEHDLIERQRDEYSGRLDNLSNQLEILARQIQQKQQETEELASKINTLT 208

Query: 242 RQLEIFQDEIVGLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAEL 301
              ++   E+   R L  KG  P   +L +ER +  + GE+ +      + + +  EA L
Sbjct: 209 TSFQLVTRELELTRPLADKGIVPEVELLKLERNVNDIRGELSSLRLLRPKLKASQDEAIL 268

Query: 302 QIIQTRQQFREDVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTLG 361
           +  +    +  +   QL E+QT+LS + E    A D +S+  +++   G I+ + ++TLG
Sbjct: 269 KRREAVFVYAAEARTQLNEMQTRLSRINEAQVGARDKVSKAEIVSPVNGTIKTVHINTLG 328

Query: 362 GIIKPGETLMEIVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQ 421
           G+++PG  ++EIVP +D+L+IE +I P+DI  + PG+   V+ +A++      ++GV+  
Sbjct: 329 GVVQPGIDIIEIVPSEDQLLIETKIIPKDIAFLHPGLPAVVKVTAYDFTRYGGLNGVVEH 388

Query: 422 VSADRFVNERDSSSYYKARIEVSDEELAKLGG--LALRAGMPVDVMIKTGERTVLHYFLK 479
           +SAD    + + +S+Y  R+      L K  G  + +  GM   V + TG+R+VL Y L 
Sbjct: 389 ISADT-TQDEEGNSFYLVRVRTELSSLTKDDGTLMPIIPGMLTTVDVITGQRSVLEYILN 447

Query: 480 PL 481
           P+
Sbjct: 448 PI 449