Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella sp. ANA-3

 Score =  184 bits (467), Expect = 6e-51
 Identities = 114/413 (27%), Positives = 215/413 (52%), Gaps = 26/413 (6%)

Query: 88  LWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEILVKEGDRVHQGDPLIRLETTQA 147
           LWA  A L       G ++  S  + +Q L+GGI++E+ V+EGD V +G PL+R++ T+ 
Sbjct: 44  LWAGFAKLDKVTTGSGKVIPSSQVQVIQSLDGGIMQELFVREGDIVTKGQPLVRIDDTRF 103

Query: 148 LASAAVVSNQFETYQALEARLVAERDE-----------------QKTITFPPDLIAVAKL 190
            +  A    +    +    R+ AE D                  +K + FP    ++ + 
Sbjct: 104 RSDFAQQEQEVLGLKTNAIRMRAELDSILISDMTSDWREQVKITKKALVFPD---SITEA 160

Query: 191 KPETAEILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSKKRQLEIFQDE 250
           +P    +++ QQ++++ R  ++  Q+ IL ++I Q +QEI+ L  +  +    +++   E
Sbjct: 161 EPA---LVRRQQEEYNGRLDNLSNQLEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRE 217

Query: 251 IVGLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAELQIIQTRQQF 310
           +   R L  KG  P   +L +ER +   +GE+ +      + + A+ EA L+  +    +
Sbjct: 218 LELTRPLAKKGIVPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDEAILKRREAVFVY 277

Query: 311 REDVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTLGGIIKPGETL 370
             D+  QL E QT+LS + E    A D +S+ V+ +   G I+ + ++TLGG+++PG  +
Sbjct: 278 AADLRAQLNETQTRLSRMNEAQVGAQDKVSKAVITSPVNGTIKTVHINTLGGVVQPGVDI 337

Query: 371 MEIVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQVSADRFVNE 430
           +EIVP +D+L+IE +I P+DI  +  G+   V+ +A++      + G +  +SAD   ++
Sbjct: 338 IEIVPSEDQLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQDD 397

Query: 431 RDSSSYYKARIEVSDEELAKLGG--LALRAGMPVDVMIKTGERTVLHYFLKPL 481
            + +S+Y  ++   +  L K  G  + +  GM   V + TG+R++L Y L P+
Sbjct: 398 -EGNSFYLIKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILEYILNPI 449