Pairwise Alignments

Query, 333 a.a., peptidoglycan DD-metalloendopeptidase family protein from Rhodanobacter denitrificans MT42

Subject, 590 a.a., Peptidoglycan-binding LysM from Synechococcus elongatus PCC 7942

 Score =  136 bits (343), Expect = 1e-36
 Identities = 108/327 (33%), Positives = 156/327 (47%), Gaps = 42/327 (12%)

Query: 44  RPVASTPARTPIPGGSYAVAKGDTLYSIAFRKGVDFRDLAQWNGIAAPYTIWPGQRLTLS 103
           RP++     +P P  +Y V  GD+L  IA R G+D +DL Q N ++ P  I+ GQRLT+ 
Sbjct: 269 RPLSPATELSPEPQ-AYTVQPGDSLSRIATRFGLDLQDLLQVNRLSNPNLIFVGQRLTI- 326

Query: 104 PPAGRAAAPPAA------------------APVHAGGASVRAAGASASSAPATSAPVFEP 145
           PPAG+A   P A                  A     G +      S SS P ++    + 
Sbjct: 327 PPAGQARLAPVATLPPLLRQQVTEDTSSRIAANLGSGLNAELTIESLSSPPPSNLKSLDI 386

Query: 146 VAAPA--SPSAAPSVEVPGTATANVPPRPVAPAVAATSVVPVAG------VPTAAPASMP 197
            A  +   PS + S  +     +  P +P  P     +V P+        + +    ++ 
Sbjct: 387 TAQTSFSGPSLSSSRSLTPALPSATPFKPQQPEPDKVAVAPLGSENYEPLLASLLKTAVA 446

Query: 198 PPAPAA-------AGVSRVVSHVQWRWPADGSLVGRF--QSGDAIPGIEIAGKSGDPVRA 248
           P  P+         G  R   ++   WPA G L   +  + G    GI+IAG  G P+ A
Sbjct: 447 PELPSLNSDELLPGGGDRFAGYI---WPARGILSSGYGWRWGRMHRGIDIAGPVGTPILA 503

Query: 249 AADGVVVYSGNGLVGYGELVIIKHSDSFLSAYGHNSKRLVKEGQRVSMGQQIAEMGSTG- 307
           AA GVVV +G    GYG LV I+H +  L+ Y HN++ LV+ G+RV  GQ +AEMGSTG 
Sbjct: 504 AAPGVVVTAGWNSGGYGNLVEIQHPNGSLTLYAHNNRILVRPGERVQQGQIVAEMGSTGR 563

Query: 308 TTRNELEFQIRKDGN-PVDPLGYLPGR 333
           +T   L F++   GN  V+P+ YLP R
Sbjct: 564 STGPHLHFEVHPRGNGAVNPIAYLPSR 590



 Score = 54.7 bits (130), Expect = 6e-12
 Identities = 52/161 (32%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 47  ASTPARTPIPGGSYAVAKGDTLYSIAFRKGVDFRDLAQWNGIAAPYTIWPGQRLTLSPPA 106
           A  PART      + V  G+TL+SIA   G+    L  +N +    T+   Q L L P A
Sbjct: 133 AEAPARTLSSQEIHRVQPGETLWSIARAHGLTVAQLLTYNQLTEGTTLRVDQVLNLQPKA 192

Query: 107 GRAAAPPAAAPVHAGGAS---VRAAGASASSAPATSAPVFEPVAAPASPSAAPSVEVPGT 163
              A    AAP+         +  AG S   +PA    V EP+++   P A P++  P T
Sbjct: 193 VEPAPIATAAPLVQDPVQQHLLALAGDSRLPSPAAERSV-EPISS-VPPQATPTLPRPVT 250

Query: 164 ATANV-PPRPVAPAVAATSVVPVAGVPTAAPASMPPPAPAA 203
           A A V  PR +APA  A        +   +PA+   P P A
Sbjct: 251 AEAPVIQPRSLAPAAVA--------IRPLSPATELSPEPQA 283