Pairwise Alignments

Query, 546 a.a., Na+/H+ antiporter from Rhodanobacter denitrificans MT42

Subject, 434 a.a., sodium/hydrogen exchanger family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (274), Expect = 1e-28
 Identities = 111/403 (27%), Positives = 186/403 (46%), Gaps = 37/403 (9%)

Query: 27  SLPLPLVQIGLGAVIAGVFKHGVA-LDPDIFFLL-FLPPLLFLDGWRIPKDGLLRDRGAI 84
           SL L L    LG  + G F  G+  LD     L   L  LLF    +I    L   +  I
Sbjct: 41  SLLLLLGGKALGGNVYGYFVAGLEKLDFQALLLNGMLGFLLFAGALQIRLKILRHQKWEI 100

Query: 85  LALA-LGLVVATVLGAGFLIHWLIP--AMPLAVAFAL--AAIVSPTDPVAVSSITARVPI 139
           L LA +G +++T +  G L+++L P   +PLA++  L   A++SPTDP+AV +I  ++  
Sbjct: 101 LILAFVGTLLSTFIVGG-LLYYLAPMFGLPLALSHCLLFGALISPTDPIAVLAILKKMGA 159

Query: 140 PRRLMHILEGESLLNDATGLVCF-RFAVAAAVTGGFSLLSASLTFLWVALVGLGVGVAFT 198
           P  +   +EGESL ND  GLV F   +  A  T   +    SL F+  AL G+  G    
Sbjct: 160 PEDIAIQVEGESLFNDGIGLVIFVAISHLAFSTEPLTFTQISLLFVQEALGGVLYGAVLG 219

Query: 199 VAVSFAQRWLSRHFGQEAGSPILISLLIPFGAYLLAEQVHASGILAAVAAGITMSYVELS 258
           + +    R+      +E    +L++LLIP   Y++A ++  SG LA V+AGI +    + 
Sbjct: 220 LLLHHFFRYC-----EEETQLMLVTLLIPTAGYVMAAELGVSGPLAMVSAGIIIGNYSVP 274

Query: 259 GRLLATTRVQRTAVWNTVQFALNGIMFVLLGEQLPASLQGAVASVAQSGHRNPWWLLVYA 318
                  RV+    W+ ++   N ++F+LLG  L          +  +     WW ++ A
Sbjct: 275 KFFARQERVKLYTFWSLIESFFNALLFLLLGLLL----------LLVTFKAPLWWFMLLA 324

Query: 319 LAINVGLALLRLAWAWISLRLNVLKARHRGHPVSRLHWRLLLATSLAGVRGAITLAGVMT 378
           + + +    + +   ++  R   L   +  +  S L W         G+RG + LA  M+
Sbjct: 325 IPLVLTARAVSVFLPYMGFR---LVKSYNPYAESILIW--------GGLRGGLALAMAMS 373

Query: 379 LP--LLLPDGTPFPARELAIFLATAVILLSLLAASIGLPPLLK 419
           LP  +++         EL + +  AV++ S+L     +  L++
Sbjct: 374 LPKGIIIDSQPGVELHELVLVMTYAVVVFSILIQGSSMTGLIR 416