Pairwise Alignments

Query, 417 a.a., polyhydroxyalkanoate depolymerase from Rhodanobacter denitrificans MT42

Subject, 411 a.a., poly[D(-)-3-hydroxyalkanoate] depolymerase from Herbaspirillum seropedicae SmR1

 Score =  498 bits (1283), Expect = e-145
 Identities = 244/411 (59%), Positives = 299/411 (72%), Gaps = 4/411 (0%)

Query: 1   MLYQIHEWQRAFLGPLSHFAQAGARMLNDTSNPFAQMPGAQRMAAGYELVHRLGKDYEKP 60
           MLYQ+HE  RAFL P+  +A+  A++ +D  +P A  P +QR+AAGYEL++RL K+YEKP
Sbjct: 1   MLYQLHELNRAFLNPMMQWAETSAKLFSDPVSPLAHTPFSQRIAAGYELLYRLSKEYEKP 60

Query: 61  AFGIHTATAHEHEIAVIERVALDMPFCQLKRFKRFSDDPSTIEKMKNDPVVLVVAPLSGH 120
            F I         + ++E V  + PFC+L  F++  D  +        P VLVVAPLSGH
Sbjct: 61  QFNIDAVPVDGKSVGIVEEVVEEKPFCRLIHFRK--DLSARQATALKQPTVLVVAPLSGH 118

Query: 121 HATLLRDTVRTLLRDHKVYVTDWVDARMVPAAAGTFGLDDYIAYVEAFIRHIGASTLHVI 180
           H+TLLR+TVR LL++H VY+TDW DARMVP   G F L DY+ YV+ FIR +G   +HVI
Sbjct: 119 HSTLLRETVRALLQEHDVYITDWTDARMVPVEQGAFHLHDYVYYVQDFIRTLGPD-VHVI 177

Query: 181 SVCQPTVPVLAAVSLMAARGEAT-PRSMTMMGGPIDPRCSPTSVNNLATHQPLSWFKGNV 239
           SVCQPTVPVLAA+SLMA+  +   P+SMTMMGGPID R SPT+VN+LAT +P SWF+  V
Sbjct: 178 SVCQPTVPVLAAISLMASANDPMLPKSMTMMGGPIDARKSPTAVNDLATEKPYSWFENTV 237

Query: 240 IHTVPPNYPGHGREVYPGFLQHAGFIAMNPGRHLNSHWDFYQDLLRGDLDDAESHRKFYD 299
           I++VP NYPG GR+VYPGFLQHAGF+AMNP RH  SHWDFY  L  GD   AE HRKFYD
Sbjct: 238 IYSVPANYPGFGRKVYPGFLQHAGFVAMNPRRHAQSHWDFYMHLRDGDDASAEEHRKFYD 297

Query: 300 EYNAVLDMPAKFYLDTIDKVFQQFLLPRGLWDVAGERVNPAAITRSALLTIEGELDDISG 359
           EYNAVLDMPA+FYL+TI  VFQ F L RG W++ G+ V P  I   AL TIEGELDDISG
Sbjct: 298 EYNAVLDMPAEFYLETIKVVFQDFNLARGTWEIEGQLVRPQDIKSVALFTIEGELDDISG 357

Query: 360 LGQTEAAHDLCSNIPAKRRAHKVIEGAGHYGIFSGRRWRETVYPQVRDFIR 410
            GQT+AA +LCS+IP  R+ H  +  AGHYGIFSGRRWRE V P++ +FIR
Sbjct: 358 SGQTQAAQELCSSIPKARKQHFTVPKAGHYGIFSGRRWREIVCPKIGEFIR 408