Pairwise Alignments

Query, 208 a.a., RNA polymerase sigma factor from Ralstonia solanacearum GMI1000

Subject, 192 a.a., RNA polymerase sigma-24 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 71.2 bits (173), Expect = 1e-17
 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 14  DAQRFAQAVLPHVDAAYNLARWLCGDAQDADDIVQEACLRAFRLFGGFRGGDG-RPWLLA 72
           D   F   VL +     +L      +  D  D+ QEA ++A+R    FRG      WL  
Sbjct: 18  DKNAFNLLVLKYQSKVISLISRYVRNQADVTDVAQEAFIKAYRALPNFRGESAFYTWLYR 77

Query: 73  IVRNT---WFSECARRRQAHTQPWQDEADLPPADDLTTYGADPAALLARADDVRRLQ-AA 128
           I  NT   +     RR  A+    +D      +D L  + +    +L+  D+++++    
Sbjct: 78  IAVNTAKNYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPERLMLS--DEIKKVVFET 135

Query: 129 LARLPVAYREVLVLRELEDLPYRDIAAVVDVPVGTVMSRLARARQQLARLL 179
           L  LP   R  + LREL+ + Y DIA ++D PVGTV SR+ RAR+ + + L
Sbjct: 136 LETLPEELRMAISLRELDGMSYEDIAIIMDCPVGTVRSRIFRAREAIDKKL 186