Pairwise Alignments

Query, 200 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Ralstonia solanacearum GMI1000

Subject, 181 a.a., AmpD protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  171 bits (432), Expect = 1e-47
 Identities = 92/176 (52%), Positives = 106/176 (60%), Gaps = 6/176 (3%)

Query: 14  GWADGVCRHPSPNVDARPEGLPIDLIVLHNISLPPARFGTDDVLDFFANTLDCGAHPYFE 73
           GW     R  SP+ + RP G  I L+V+HNISLP   FG   +   F   LD  A   F 
Sbjct: 6   GWFTAARRCESPHFNQRPFG-EISLLVIHNISLPAGCFGLPYIDQLFQGCLDTNADNSFA 64

Query: 74  QLRGVRVSAHFFIRRTGACVQFAPCDARAWHAGVSDFFGRTRCNDFSIGIEIEGTDDQPF 133
            L G++VSAHF IRR G CVQ+  CD RAWHAGVS +  R  CNDFSIGIE+EGTD +P+
Sbjct: 65  DLAGLKVSAHFLIRRDGECVQYVSCDDRAWHAGVSRYGERENCNDFSIGIELEGTDTEPY 124

Query: 134 TPAQYAATAALVRAICAAY---PIRAIAGHSDIAPGRKTDPGPCFDWAHLRRLAKL 186
           T AQY     L +A+ A Y       I GH DIAP RKTDPGP FDW   R L KL
Sbjct: 125 TAAQYQQLVELTQALLAQYSSLSAERIVGHCDIAPVRKTDPGPSFDWE--RYLTKL 178