Pairwise Alignments

Query, 828 a.a., RNA polymerase sigma factor RpoD from Ralstonia solanacearum GMI1000

Subject, 620 a.a., RNA polymerase sigma-70 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  669 bits (1725), Expect = 0.0
 Identities = 353/620 (56%), Positives = 444/620 (71%), Gaps = 13/620 (2%)

Query: 211 RQKLKALIKLGKSRGYLTYAEINDHLPDDMVDAESMDTLVATLNDIGIAVYEQAPDAETL 270
           + +LK L+  GK +GYLTYAE+NDHLP DMVD++ ++ ++  +ND+GI VYE+APDA+ +
Sbjct: 9   QSQLKMLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYEEAPDADEM 68

Query: 271 LLNDNAPSVTTEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 330
           +++++     T+E+A EEA AAL+TV+SE GRTTDPVRMYMREMGTVELLTREGEI IAK
Sbjct: 69  MMSED----NTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAK 124

Query: 331 RIEAGLKDMVMAISACPVTISEILAMGERVANDEAKIDEYIDGLIDPNAD--AAEAAQAG 388
           RIE G+  +  +++  P  IS IL   ++   D  ++ + I G +DPN +     A   G
Sbjct: 125 RIEEGINTVQSSVAEYPQAISMILEQFDQFEADAIRLSDIISGFVDPNEEDVGPTATHIG 184

Query: 389 DE--DEDFEDEDADESGDEEEDEDDDGSGSSAASARQLEELKQAALAKFAIIGDQFEKMR 446
            E  +E+ EDED D   DEEEDED D S    A     E  ++    +FA +   ++   
Sbjct: 185 SELSEEELEDED-DMDEDEEEDEDGDSSDDDGAKGPDPEVARE----RFAALRAAYDNAL 239

Query: 447 RAFEKEGYKSKPYLKAQEAIQNELMTIRFTARNVERLCDTLRGQVDEVRKLERAILNIVV 506
           +  E +G       +A   +       R   +  +RL  ++R  +D+VR  ER I+ + V
Sbjct: 240 KVIEVKGRAHPESTRALFELGEIFKEFRLVPKQFDRLVKSMREMMDKVRVQERLIMKLCV 299

Query: 507 DKCGMSRGDFVSRFPGNETNLGWINTVVADGKPYSAIVERNIPAVHELQQKLIDLQARVV 566
           ++  M + +FV  F GNET+L W N  +  G+PYSA ++     V   + KL  ++    
Sbjct: 300 EQAKMPKKNFVKLFTGNETDLTWFNKEIEAGRPYSADLKLVDEDVQRCRAKLEAIEVETG 359

Query: 567 LPLAELKDVNKKMSEGERRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 626
           L +  +KD+N++MS GE +AR AK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
Sbjct: 360 LSIESIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 419

Query: 627 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ 686
           MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQ
Sbjct: 420 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 479

Query: 687 ETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPA 746
           E G EP P  LAE+M MPEDKIRK++KIAKEPISMETPIGDD+DSHLGDFIEDT    P 
Sbjct: 480 EMGREPSPEELAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 539

Query: 747 EAALHGSMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEA 806
           ++A   S++    +VL  LT REAKVLRMRFGI+M+TDHTLEEVGKQFDVTRERIRQIEA
Sbjct: 540 DSATSESLKQATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 599

Query: 807 KALRKLRHPSRSDKLKSFLE 826
           KALRKLRHPSRS+ LKSFL+
Sbjct: 600 KALRKLRHPSRSEILKSFLD 619