Pairwise Alignments

Query, 828 a.a., RNA polymerase sigma factor RpoD from Ralstonia solanacearum GMI1000

Subject, 619 a.a., RNA polymerase, sigma 70 subunit, RpoD (RefSeq) from Shewanella sp. ANA-3

 Score =  659 bits (1701), Expect = 0.0
 Identities = 343/618 (55%), Positives = 443/618 (71%), Gaps = 10/618 (1%)

Query: 211 RQKLKALIKLGKSRGYLTYAEINDHLPDDMVDAESMDTLVATLNDIGIAVYEQAPDAETL 270
           + +LK L+  GK +GYLTYAE+NDHLP DMVD++ ++ ++  +ND+GI V+E+APDA+ +
Sbjct: 9   QSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAPDADDM 68

Query: 271 LLNDNAPSVTTEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 330
           +++++     T+E+A EEA AAL+TV+SE GRTTDPVRMYMREMGTVELLTREGEI IAK
Sbjct: 69  MMSED----NTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAK 124

Query: 331 RIEAGLKDMVMAISACPVTISEILAMGERVANDEAKIDEYIDGLIDPNAD--AAEAAQAG 388
           RIE G+  +  +++  P  I+ IL   ++   DE ++ + I G ++P+ +     A   G
Sbjct: 125 RIEEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIISGFVNPDEEDLGPTATHIG 184

Query: 389 DEDEDFEDEDADESGDEEEDEDDDGSGSSAASARQLEELKQAALAKFAIIGDQFEKMRRA 448
            E     +ED D+  D+E+DED+DG G       +  + ++A   +F+ +   +E   + 
Sbjct: 185 SE---LSEEDLDDEDDDEDDEDEDGDGEGDDDGNKGPDPEEAR-ERFSQLRTAYENALKI 240

Query: 449 FEKEGYKSKPYLKAQEAIQNELMTIRFTARNVERLCDTLRGQVDEVRKLERAILNIVVDK 508
            + +G +    ++A   I       R   +  +RL  ++R  +D VR  ER ++ + V++
Sbjct: 241 IDAKGREHPESIQALFEIGEIFKEFRLVPKQFDRLVKSMRSMMDRVRVQERLLMKLCVEQ 300

Query: 509 CGMSRGDFVSRFPGNETNLGWINTVVADGKPYSAIVERNIPAVHELQQKLIDLQARVVLP 568
             M + +FV  F GNETNL W +      KPY+  +      V   + KL  ++    L 
Sbjct: 301 AKMPKKNFVKFFTGNETNLDWFDAEKNSTKPYAEGLRMVEEDVQRCRSKLAAIEEETGLV 360

Query: 569 LAELKDVNKKMSEGERRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 628
           +A +KD+N++MS GE +AR AK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
Sbjct: 361 IAAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 420

Query: 629 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET 688
           AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE 
Sbjct: 421 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 480

Query: 689 GNEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEA 748
           G EP P  LAE+M MPEDKIRK++KIAKEPISMETPIGDD+DSHLGDFIEDT    P ++
Sbjct: 481 GREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 540

Query: 749 ALHGSMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA 808
           A   S++    +VL  LT REAKVLRMRFGI+M+TDHTLEEVGKQFDVTRERIRQIEAKA
Sbjct: 541 ATSESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 600

Query: 809 LRKLRHPSRSDKLKSFLE 826
           LRKLRHPSRS+ LKSFL+
Sbjct: 601 LRKLRHPSRSEILKSFLD 618