Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Ralstonia solanacearum IBSBF1503

Subject, 1345 a.a., DNA-directed RNA polymerase, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1719 bits (4451), Expect = 0.0
 Identities = 869/1373 (63%), Positives = 1069/1373 (77%), Gaps = 35/1373 (2%)

Query: 1    MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAI 60
            M YS++EKKRIRK F KR  V  +P+LL+ Q+ S+ +F  +  +  +    GL+AAF ++
Sbjct: 1    MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGER----GLEAAFRSV 56

Query: 61   FPIVSHNGLARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT-KVKE 119
            FPI S +G + +++VSY L  P FDVKECQ RG+T+ + LR K+R+++ DRE     VK+
Sbjct: 57   FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKD 116

Query: 120  IKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 179
            IKEQEVYMG+IPLMT  G+FVINGTERVIVSQLHRSPGVFF+HD+GKTHSSGK+L++ARI
Sbjct: 117  IKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARI 176

Query: 180  IPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSDG 239
            IPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+++  + ++IL  FF    F +K D 
Sbjct: 177  IPYRGSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDT 236

Query: 240  ALMEFVPERLRGEVARFDISDKNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDYLLGR 299
             +M  VPERLRGE A +DI D  G V++E  +R+ A+HIR L+   T  + VP +Y++G+
Sbjct: 237  LVMTLVPERLRGETASYDIKDAEGTVLVEAGRRVTARHIRQLEKTNTTELEVPVEYIVGK 296

Query: 300  VLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKDIQTLYTNDLDQGPYMSQTLRTDD 359
              A++ +DPDTGEVL +AN E++   L KL  AG+K++ TLY N+LD G Y+S TLR D 
Sbjct: 297  YAAQDYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDP 356

Query: 360  TVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNRSEGT 419
            T ++  A + IYRMMRPGEPPT+DA EALFQ LF+SE+ YDLS+VGRMK N RL+  +  
Sbjct: 357  TTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDE 416

Query: 420  GPMVLTDDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAV 479
            G  VL+ +DI+  +K ++++RNG  EVDDIDHLGNRR+R VGE+AENQFR GL RVERAV
Sbjct: 417  GSGVLSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 476

Query: 480  KERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRISALGP 539
            +ERL   +   LMP DLIN+KPIS+A++EFFGSSQLSQFMDQ NPLSEVTHKRRISALGP
Sbjct: 477  RERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 536

Query: 540  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPYRKVE 599
            GGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA +A+ N YGFLETPYRKV 
Sbjct: 537  GGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVV 596

Query: 600  NSKLTDEVHYLSAIEEGKYVVAQANATVDKDGNLVDELVSAREGSERETRMVTPDRVQYI 659
            +  +TDEV YLSAIEEG+YV+AQAN  VD +G +V+E ++ R   + E+  +    +QY+
Sbjct: 597  DGVITDEVEYLSAIEEGRYVIAQANIEVDSEGRMVEEQIACRH--KGESTFMRASDIQYM 654

Query: 660  DVAPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGIERTVAVDSG 719
            DV+P QI+S AASL+PFLEHDDANRALMGANMQRQAVP LR++KPLVGTGIERT+AVDSG
Sbjct: 655  DVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSG 714

Query: 720  TAVQATRGGVVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPMVKV 779
              V A RGGV+DYVDA+R+V++VN+DE   GE G+DIYNL KYTRSNQNT INQRP   V
Sbjct: 715  VVVAAKRGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSV 774

Query: 780  GDIVARGDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHI 839
            G+ V RGDV+ADG STD+G+LALGQNM +AFMPWNGYNFEDSILISERV  EDR+T+IHI
Sbjct: 775  GEPVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHI 834

Query: 840  EELSVVARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTPKGET 899
            +ELS +ARDTKLG EEIT DI N+ E+ L++LDESGI YIGAEV+ GD+LVGKVTPKGET
Sbjct: 835  QELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGET 894

Query: 900  QLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSIIDEEL 959
            QLTPEEKLLRAIFGEKASDVKD+SLRVP+ + GT+IDVQVFTR+GV +DKRA  I +  +
Sbjct: 895  QLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEMHI 954

Query: 960  KRYRLDLNDQLRIVEGDAFQRLERLLVGKVANGGPKKLSKGTALTKEYLADLDKWHWFDI 1019
             + R DL ++ +I+E     R   LL+    + G  +        K+ L  +        
Sbjct: 955  AQARKDLGEEFKILEEGVLSRARNLLL----SAGFSEAQIAALPRKDVLVQV-------- 1002

Query: 1020 RPSDEEVAAQLEAVKEAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAVKRRL 1079
               DE    +LE + E  E+ + DFD  FE KR+K+TQGD+L PGV+K+VKVYLAVKR +
Sbjct: 1003 -IDDEAKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTI 1061

Query: 1080 QPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETHLGWA 1139
            QPGDKMAGRHGNKGV+SKI PIEDMPY   G P DIVLNPLGVPSRMN+GQ+LE HLG A
Sbjct: 1062 QPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGAA 1121

Query: 1140 ARGLGERIGNMLKAQAK--AAEIRKLLGQIYNESGKVE---DLDSLTDAEVLELAENLKK 1194
            A+G+G +I  ML+ Q +   AE+R  + Q+Y    +V+   D+DS TD E+L LA NLK 
Sbjct: 1122 AKGIGHKIAAMLEDQREKGLAEVRNYIKQVYELGDEVQQRVDIDSFTDDELLRLANNLKG 1181

Query: 1195 GVPFATPVFDGAHEDEIRRMLDLAYPADIAKEKGLTASKQQVTLFDGRTGEAFERPVTLG 1254
            G+P ATP FDGA E EI++ML+LA         GL  S  Q+ LFDGRTG  FERPVT+G
Sbjct: 1182 GIPVATPAFDGAKEKEIKQMLELA---------GLPTS-GQLKLFDGRTGNEFERPVTVG 1231

Query: 1255 VMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314
             M+MLKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQ
Sbjct: 1232 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1291

Query: 1315 EMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLER 1367
            EMLTVKSDDVNGRT++Y+NIV G H +  GMPESFNVL+KEIRSLGI+I+L++
Sbjct: 1292 EMLTVKSDDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQ 1344