Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Ralstonia solanacearum IBSBF1503

Subject, 1372 a.a., DNA-directed RNA polymerase, beta subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 1410 bits (3651), Expect = 0.0
 Identities = 752/1373 (54%), Positives = 951/1373 (69%), Gaps = 34/1373 (2%)

Query: 10   RIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAIFPIVSHNGL 69
            ++ K F K      +P LL  Q+ SY +FLQE  +  +R  EGL+  F ++FPI   N  
Sbjct: 3    QLTKKFGKIDVSLPIPHLLNLQVDSYVKFLQEGAT-ERRHDEGLEGVFRSVFPIEDFNRT 61

Query: 70   ARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPT---KVKEIKEQEVY 126
            A +EFVSY +  P +D  EC  +GLT+ + +R KVRL++ D +  +    +++IKEQE+Y
Sbjct: 62   ASLEFVSYEVGEPKYDQPECISKGLTYEAPIRIKVRLVVYDVDEDSGNRTIRDIKEQEIY 121

Query: 127  MGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSW 186
             G +PLMT  G+F+INGTERVIV+QL RSPG+ FEHD GKTHSS K+L+S RIIP RGSW
Sbjct: 122  FGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHSSRKVLYSCRIIPMRGSW 181

Query: 187  LDFEFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSDGALM-EFV 245
            LDF+FD KDILY R+DRRRKMP TIL K++G++   IL +F+  + + L   G LM E  
Sbjct: 182  LDFDFDHKDILYVRIDRRRKMPATILFKAMGMSKTDILDYFYKKEFYRLDPMGRLMWEVQ 241

Query: 246  PERLRGEVARFDISDKNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDYLLGRVLAKNI 305
             +  R + A  DI D  G  +++  K I  +  R +  AG + I V  D + G  LA++I
Sbjct: 242  KDMYRKDSAFVDIEDGKGGTIVKAGKPITKRAWRLISEAGLETIEVAPDTIEGMFLAEDI 301

Query: 306  VDPDTGEVLANANDELTEGVLEKLRDAGVKDIQTLYTNDLDQGPYMSQTLRTDDTVDQTA 365
            V+P TGEVLA A DE+T  ++E LR+AG+  +  L+T  L+    +  TL  D T D  A
Sbjct: 302  VNPATGEVLAEAADEITASLVENLREAGISRLPVLHTKGLETSSSLRDTLVLDKTPDMEA 361

Query: 366  ARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDSYDLSRVGRMKVNSRLNRSEGTGPMVLT 425
            A++ IYR +RP  PPT +   + F  LF S D YDLS VGR K+N RL   +      LT
Sbjct: 362  AQVEIYRRLRPSSPPTPEIAASFFDNLFRSADYYDLSPVGRYKLNQRLGIDQSVDLRTLT 421

Query: 426  DDDILDTIKLLVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVKERLGQ 485
            DDDIL  I++L++L++  G  DDIDHLGNRRVR VGEL ENQ+R GL R+ERA+KER+  
Sbjct: 422  DDDILRAIRVLLHLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMSL 481

Query: 486  AETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEVTHKRRISALGPGGLTRE 545
             E   LMPHDLIN KP+++ ++EFFG+SQLSQFMDQTN LSEVTHKRR+SALGPGGLTRE
Sbjct: 482  QEVSTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTRE 541

Query: 546  RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNDYGFLETPYRKVENSKLTD 605
            RAGFEVRDVH +HYGR+CPIETPEGPNIGLI SL  YA++ND+GF+ETPYR +    LTD
Sbjct: 542  RAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDFGFIETPYRIIREGALTD 601

Query: 606  EVHYLSAIEEGKYVVAQANATVDKDGNLVDELVSAREGSERETRMVTPDRVQYIDVAPSQ 665
            E+ +L A  E   VVAQANA VD DG L DE V+AR     +  M   D V  +D++PSQ
Sbjct: 602  EIKFLDASREQGEVVAQANAAVDADGKLADEYVTAR--VRGDVLMSHRDEVTLMDISPSQ 659

Query: 666  IVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRADKPLVGTGIERTVAVDSGTAVQAT 725
            +VS +A+L+PFLEHDDANRALMG+NMQRQAVP LR++KP+VGTG+E  VA DSG  + A 
Sbjct: 660  MVSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPIVGTGMEGDVARDSGACILAE 719

Query: 726  RGGVVDYVDANRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPMVKVGDIVAR 785
              G+V Y DA R+++   ++       GV  Y+L KY +SNQN+   QRP    G IV +
Sbjct: 720  GPGIVRYADATRIIVSY-ENGLYPDRGGVRAYDLQKYHKSNQNSCFGQRPTCHPGQIVKK 778

Query: 786  GDVIADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELSVV 845
            GDV+ADG   + GELALG+N++VAFMPW GYNFEDSILISERVV ED +TSIHIEE  VV
Sbjct: 779  GDVLADGPGIEDGELALGKNLVVAFMPWCGYNFEDSILISERVVKEDVFTSIHIEEFEVV 838

Query: 846  ARDTKLGPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTPKGETQLTPEE 905
            ARDTKLGPEEITRDI N+ E  L  LD SGI  IGA V+  D+LVGK+TPKGETQLTPEE
Sbjct: 839  ARDTKLGPEEITRDIPNVGEDMLRNLDGSGIIRIGASVKPDDILVGKITPKGETQLTPEE 898

Query: 906  KLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGVTRDKRAQSIIDEELKRYRLD 965
            KLLRAIFG+KA DVK+TSL+VP G+ GT+IDV+VF R    +D+R ++I D E  R    
Sbjct: 899  KLLRAIFGDKARDVKNTSLKVPPGIEGTIIDVKVFNRRSGEKDERTRNIEDYETARIDKK 958

Query: 966  LNDQLRIVEGDAFQ-RLERLLVGK---VANGGPKK----LSKGTALTKEYLADLDKWH-- 1015
              D +R + GDA + RL   LVGK   V   G +K       G  +T+E L  L      
Sbjct: 959  EQDHVRAL-GDALRDRLADTLVGKQIAVTLPGKRKGEVLAEAGAPMTRELLDALPVKRLA 1017

Query: 1016 -WFDIRPSDEEVAAQLEAVKEAIEQKRHDFDLAFEEKRKKLTQGDELPPGVIKMVKVYLA 1074
              F  R  DE V   LE     +   +  +D     KR+K+T+GD+LPPGVIKMVKV++A
Sbjct: 1018 GLFKSREVDEMVDTALEDYDRQVAFLKGIYD----SKREKVTEGDDLPPGVIKMVKVHIA 1073

Query: 1075 VKRRLQPGDKMAGRHGNKGVVSKITPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILET 1134
            VKR+L  GDKMAGRHGNKGVVS I P EDMP+ ADG P DIVLNPLGVPSRMN+GQI+ET
Sbjct: 1074 VKRKLNVGDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMET 1133

Query: 1135 HLGWAARGLGERIGNMLKAQAKAAEIRKLLGQIYNESGKVEDLDSLTDAEVLELAENLKK 1194
            HLGW A+ LG ++  ML + A  A +R  +  ++  +   + +D + D    +    L+ 
Sbjct: 1134 HLGWGAKELGRQLAEMLDSGAAMATLRHEVKDVFRSATIAKLVDEMDDETFRKAVSKLRT 1193

Query: 1195 GVPFATPVFDGAHEDEIRRMLDLAYPADIAKEKGLTASKQQVTLFDGRTGEAFERPVTLG 1254
            G+   TPVFDGA E++I   ++ A         G+    + V L+DGRTG+ F   VT G
Sbjct: 1194 GIVTKTPVFDGASEEDIWSWIERA---------GMDGDGKTV-LYDGRTGDKFYNRVTTG 1243

Query: 1255 VMHMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQ 1314
            VM++LKLHHLVD+K+HARSTGPYSLVTQQPLGGKAQFGGQR GEMEVWALEAYGASY+LQ
Sbjct: 1244 VMYILKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQ 1303

Query: 1315 EMLTVKSDDVNGRTKVYENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLER 1367
            E LTVKSDDV GR K+YE IVKG++ ++AG+PESFNVLVKE+ SLG+++ L +
Sbjct: 1304 EFLTVKSDDVTGRVKMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQ 1356