Pairwise Alignments

Query, 311 a.a., HTH-type transcriptional regulator MetR from Rahnella sp. WP5

Subject, 299 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  230 bits (586), Expect = 4e-65
 Identities = 122/274 (44%), Positives = 173/274 (63%), Gaps = 6/274 (2%)

Query: 1   MIELKHLRTLQALRNTGSLAAAASQLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTP 60
           MIEL+HLRTL AL+ +GSLA AA +   TQSALSHQ  +LE R+   +FVRKS+PL FT 
Sbjct: 1   MIELRHLRTLVALKESGSLAGAAKKRFVTQSALSHQIKELETRINSAIFVRKSKPLSFTQ 60

Query: 61  QGEIMLNLAEQVLPQIQQA---LQACNEPHQTSLRIAIECHSCIQWLTPALDNFHQNWPQ 117
           +G  +LNLAE++LP++ +    L+         L + IECHSC +WL P ++ F+ ++P 
Sbjct: 61  EGARLLNLAEEILPKVIETEIDLKNGLGSEARDLFVGIECHSCFRWLMPVIEQFNASFPH 120

Query: 118 VLMDFKSGVTFDPQPSLQQGELDIVLTSDILPRSGLHYSPMFDFEVRLVLAPDHPLATKT 177
             ++  S   FD   +L+QG+LD+VLTSD +P   + Y  +FDFEV+L++A DHPLA   
Sbjct: 121 TNLELSSRHLFDSLTALKQGQLDVVLTSDPIPDHDIAYQHLFDFEVKLLVAADHPLAELP 180

Query: 178 VITPEDLSTETLMIYPVQRQRLDIWRHFLQPAGVSPSLKSV--DNTLLLIQMVSARMGIA 235
            +T   L  +TL+ YPV   RLDI+RHF++PAGV P  K +  D T +L+Q ++ + G+A
Sbjct: 181 YVTAAQLKDQTLLTYPVPLDRLDIYRHFMEPAGV-PVAKQIRCDLTAMLLQRIACKDGVA 239

Query: 236 ALPHWVVESFERQGLVVTKTLGDGLWSRLYAAVR 269
           ALP W +       L   K   +GL   L+ A R
Sbjct: 240 ALPSWSINEAHGLSLKAVKLGSEGLRRPLFGAYR 273