Pairwise Alignments

Query, 1031 a.a., multidrug efflux RND transporter permease subunit from Rahnella sp. WP5

Subject, 1044 a.a., Cation/multidrug efflux pump from Sinorhizobium meliloti 1021

 Score = 1034 bits (2673), Expect = 0.0
 Identities = 542/1031 (52%), Positives = 728/1031 (70%), Gaps = 7/1031 (0%)

Query: 5    FIKRPRFAVVIALVTALIGAVALKVIPVEQYPDITPPVVSVSAIYPGASARDVAESVAAP 64
            FI RPR A VIA+V A+ GA+AL  IP+ Q+P ITPP V V+A YPGA+A  + ESV AP
Sbjct: 7    FIDRPRLATVIAVVMAIAGALALFQIPIAQFPQITPPEVQVTASYPGANASVLEESVGAP 66

Query: 65   IEAQVNGVSNMLYMSSNSGNNGSYTLTITFASGTDPDTAAVEVQNRISQVSSRLPPEVLN 124
            IE QVNGV +MLYMSS+S NNG+Y+LT+TFA GTDP  A V VQNR++  + RLP  V  
Sbjct: 67   IEDQVNGVEDMLYMSSSSTNNGTYSLTVTFAVGTDPALAQVNVQNRVALATPRLPASVTQ 126

Query: 125  TGVSVRKQASNILMGISLLSPENTHDMLFISNFASIQLRDALARVDGVGDVRVFGSRDYS 184
            TGVSVR ++S++LMG+++ SPE T D +FISN+A+  +RDA+ARV GVG+  +FG   YS
Sbjct: 127  TGVSVRARSSSMLMGVAIYSPEGTRDEIFISNYAANNIRDAIARVAGVGEAGIFGP-SYS 185

Query: 185  MRIWLDPRKMEALDVSSMEISAAIQNQNVQAAAGQIGASPSPSMQQQTLTISGAGRLSSP 244
            MRIW++P +M+AL +++ ++++AIQ QN QA+AGQ+G+ P+ S QQ  LTI   GRL++ 
Sbjct: 186  MRIWMNPDRMQALGLTATDLTSAIQAQNAQASAGQLGSPPATSGQQLQLTIMAQGRLATE 245

Query: 245  EEFGNIIVRKNAHGGTVRLRDVARIELGAQDYQVNATLNQTPSAFLSVYPAPGANALNVA 304
            E+F NIIVR N  G  VRLRDVAR+ELGAQ Y   +T N  PSA + VY +  ANAL V+
Sbjct: 246  EDFSNIIVRTNTEGALVRLRDVARVELGAQSYDTASTFNGQPSATVVVYQSAEANALAVS 305

Query: 305  NAVREEMSRQARNFPDDLTYEIKFDSTRFVSATLDEIAVSLVLTFVVVLSIVYLFLQSVR 364
             AV  E+ R +R FP+D+ Y I FD+T F++ T+ EIA++L +TF +V+++ Y FLQ  R
Sbjct: 306  RAVLSELDRLSRQFPEDVAYAIVFDTTAFITETIKEIAITLAITFALVVAVTYFFLQDWR 365

Query: 365  ATFIVALTIPVSLLGTFAVLYAFGYSANTLSLFAIILALTVVVDDAIVVVENVERLMMED 424
            AT I  LTIPVSL+G FAVLY   YSANT++LFA+ILA+++VVDDAI+VVENV+RLM E+
Sbjct: 366  ATVIPTLTIPVSLIGGFAVLYLLDYSANTITLFAVILAISLVVDDAIIVVENVKRLMAEE 425

Query: 425  PSLGRVAATRKALKQIAGPVIATTVVLLAVFVPIAVLPGITGALYRQFAVTLSAAVVLSS 484
              L    ATR+ + Q+ GP++ATT+VL A+FVPIA + GITG LYRQF+VT+   +  S+
Sbjct: 426  -RLNVHDATRRTMSQVTGPIVATTLVLAALFVPIAFVAGITGQLYRQFSVTILITITFST 484

Query: 485  INALTLTPALCATLLKPRPAKPARVFHWFNQGLDAVRDVYVKAARGISKSAFTSVVTVLV 544
            INALTL+PALC  +L+    + + +F  FN+GLD  R+ YV     +S+  + + V +L 
Sbjct: 485  INALTLSPALCVLMLRSPREQRSGIFGTFNRGLDFSRNWYVAMLDRMSRRLWIASVILLA 544

Query: 545  IGGACVWGYSSLPKSFLPDEDQGYFFVNVQLPDGASLNRTDAVLGQMQQIMQKDPAVEDV 604
            I G     + +LP  F+P EDQGY F+NVQLP+ ASL RT   L  + +I+Q+ P V + 
Sbjct: 545  ILGGVYGLFRALPTGFVPSEDQGYLFINVQLPNAASLERTQQALDTVSRILQRTPGVANS 604

Query: 605  IAISGFSLLSGGSSPNTAFGIVLLKPWGDR----DSVDQVIGRLQPAMAGIPSAMIMAIN 660
            + I+G S++ GG S N    I  LKPWG+R    +S+D ++ RL+     IP+A ++  N
Sbjct: 605  VGIAGNSMVGGGGS-NAGMVITALKPWGERRSAEESIDAIMNRLRADFGRIPTASVVPFN 663

Query: 661  PPAISGLGTASGLDLRLQALQGQSPQELAVTGQALIQAANQDPNLSRVFTTFSASVPEIA 720
            PPAI GLGT  G DLRLQA  GQS QE+A   + LI  ANQ P L+ VF+TFSA VP++ 
Sbjct: 664  PPAIPGLGTTGGFDLRLQARSGQSQQEIAEVMRGLIVKANQTPGLASVFSTFSADVPQVF 723

Query: 721  LSVDRDRAALLQVPVSRIFGTLQTSLGGVNVSDFIINNRLFNVQMQNEMEDRQRADQIST 780
            L+VDR RA L  V  + IF  +Q+ LG   V DF I +R++ V++Q+E + R R + I  
Sbjct: 724  LNVDRRRAELFGVSTATIFNAMQSHLGSSYVDDFNIFSRVYQVRIQDEPQFRSRIEDIQR 783

Query: 781  LTVRSDNGSLVSLAKMVEMTPSLGAPFITQYNQFPSLAISGSAAPGISSGEAMAQMEHIL 840
            L VRS NG LV L  ++ ++ S G   I +YN FPS +I+G AA G S+G+A+A M  + 
Sbjct: 784  LRVRSRNGELVPLQSLLSISTSYGPTAINRYNLFPSASINGQAATGTSTGQALATMASLA 843

Query: 841  SEKLPAGYGYEWTGMSLQEIQAGGQAILIYAAALLFAYLFLVAQYESWSIPLVVMISVIF 900
             + LP G+G+EWTG++LQE QAG Q  LI    L+F YLFLV QYESWS+PL VM+SV  
Sbjct: 844  EQNLPEGFGFEWTGLALQEEQAGNQTALILLMGLIFTYLFLVGQYESWSVPLAVMLSVAV 903

Query: 901  AVFGAIGGLHMAGLSNDVYAQIGMVLLIGLAAKNAILIVEFSKARREEGASVSEAAQDGA 960
            AV GA+ GL +A +  ++YAQIG+VLLIGLAAKNAILIVEF+K RR++G +  EAA  G 
Sbjct: 904  AVLGALVGLMLASIDINIYAQIGLVLLIGLAAKNAILIVEFAKERRDKGMATPEAAAAGT 963

Query: 961  KQRFRAVMMTAISFILGVLPLVMASGAGAMSRHIIGVTVFSGMLLSTTVGILFIPALYLH 1020
             QRFR V+MTA++ ILGV+PLV+A+GAGA SR  IG+TVF G+L+ T VG+L IP  Y+ 
Sbjct: 964  AQRFRPVLMTAMASILGVIPLVIATGAGAGSRRAIGMTVFGGLLVGTVVGLLLIPVFYVL 1023

Query: 1021 IQRLREWVKSR 1031
            +Q +RE  K R
Sbjct: 1024 VQTVREQAKER 1034



 Score = 48.5 bits (114), Expect = 2e-09
 Identities = 65/337 (19%), Positives = 124/337 (36%), Gaps = 41/337 (12%)

Query: 189  LDPRKMEALDVSSMEISAAIQNQ---------NVQAAAGQIGASPSPSMQQQTLTISGAG 239
            +D R+ E   VS+  I  A+Q+          N+ +   Q+     P  + +        
Sbjct: 726  VDRRRAELFGVSTATIFNAMQSHLGSSYVDDFNIFSRVYQVRIQDEPQFRSRI------- 778

Query: 240  RLSSPEEFGNIIVRKNAHGGTVRLRDVARIELGAQDYQVNATLNQTPSAFLSVYPAPGAN 299
                 E+   + VR   +G  V L+ +  I        +N   N  PSA ++   A G +
Sbjct: 779  -----EDIQRLRVRSR-NGELVPLQSLLSISTSYGPTAINR-YNLFPSASINGQAATGTS 831

Query: 300  ALNVANAVREEMSRQARNFPDDLTYEIKFDSTRFVSATLDEIAVSLVLTFVVVLSIV--Y 357
                  A+    S   +N P+   +E       +    L E         ++++ ++  Y
Sbjct: 832  T---GQALATMASLAEQNLPEGFGFE-------WTGLALQEEQAGNQTALILLMGLIFTY 881

Query: 358  LFL----QSVRATFIVALTIPVSLLGTFAVLYAFGYSANTLSLFAIILALTVVVDDAIVV 413
            LFL    +S      V L++ V++LG    L       N  +   ++L + +   +AI++
Sbjct: 882  LFLVGQYESWSVPLAVMLSVAVAVLGALVGLMLASIDINIYAQIGLVLLIGLAAKNAILI 941

Query: 414  VENVERLMMEDPSLGRVAATRKALKQIAGPVIATTVVLLAVFVPIAVLPGITGALYRQFA 473
            VE  +     D  +    A      Q   PV+ T +  +   +P+ +  G      R   
Sbjct: 942  VEFAKE--RRDKGMATPEAAAAGTAQRFRPVLMTAMASILGVIPLVIATGAGAGSRRAIG 999

Query: 474  VTLSAAVVLSSINALTLTPALCATLLKPRPAKPARVF 510
            +T+   +++ ++  L L P     +   R     R F
Sbjct: 1000 MTVFGGLLVGTVVGLLLIPVFYVLVQTVREQAKERFF 1036