Pairwise Alignments

Query, 668 a.a., excinuclease ABC subunit B from Rahnella sp. WP5

Subject, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

 Score = 1014 bits (2623), Expect = 0.0
 Identities = 514/676 (76%), Positives = 588/676 (86%), Gaps = 8/676 (1%)

Query: 1   MSKEFKLHSEFKPSGDQPEAIRRLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPT 60
           MSK F+L S+++P+GDQP AI++L EGLE GLAHQTLLGVTGSGKTFT+ANVIA   RPT
Sbjct: 1   MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPT 60

Query: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120
           ++LAPNKTLAAQLYGEMK FFP NAVEYFVSYYDYYQPEAYVP++DTFIEKDASVN HIE
Sbjct: 61  IILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE 120

Query: 121 QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQ 180
           QMRLSATKALLER+D ++VASVSAIYGLGDPD YLKMMLHL +G +I+QR +LRRLAELQ
Sbjct: 121 QMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQ 180

Query: 181 YARNDQAFQRSTFRVRGEVIDVFPAESDDLALRIELFDQEVERLSLFDPLTGQV-QHEVP 239
           Y+RND AF+R  FRVRGEVID+FPAESD  A+R+E+FD E+E +SLFDPLTG +   ++ 
Sbjct: 181 YSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLA 240

Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKVELADRRKVLLANNKLLEEQRISQRTQFDLEMMNE 299
           RFTIYPKTHYVTPRERI++A+E+IK EL  RR+ LL NNKLLEEQRISQRTQFD+EMMNE
Sbjct: 241 RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNE 300

Query: 300 LGYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKE 359
           LG+CSGIENYSRYLSGR  GEPPPTLFDYLP DGLLI+DESHVT+PQIG M+KGDRSRKE
Sbjct: 301 LGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKE 360

Query: 360 TLVEYGFRLPSALDNRPMRFEEFEALAPQSIYVSATPGKYELEKSGDDVVDQVVRPTGLL 419
           TLVE+GFRLPSALDNRP++F+EFEALAPQ+I+VSATP +YEL KSG +V +QVVRPTGLL
Sbjct: 361 TLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLL 420

Query: 420 DPIIEVRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSD 479
           DPIIEVRPV TQVDDLLSE R R A +ER+LVTTLTKRMAEDLTEYL EHG KVRYLHSD
Sbjct: 421 DPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD 480

Query: 480 IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539
           IDTVERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+
Sbjct: 481 IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTM 540

Query: 540 GRAARNLNGKAILYGDKITNSMARAIEETERRRAKQEAYNLENGITPMGLNKKISDILQL 599
           GRAARN+NGKAILY D IT SM +AI+ETERRR KQ AYN + GITP  L + + DI++L
Sbjct: 541 GRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMEL 600

Query: 600 GQ-PKTKKNKDK------RDAEAAQTFKSLTPKALEQRIKELESKMYAHAQNLEFEEAAN 652
           G   K++K K+       + AE +  ++ LTP+ LE+ I +LE+ MY HAQNLEFE AA 
Sbjct: 601 GDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQ 660

Query: 653 TRDELHALREQFIAIS 668
            RDE+H LR+QFIA S
Sbjct: 661 KRDEIHQLRQQFIANS 676