Pairwise Alignments

Query, 668 a.a., excinuclease ABC subunit B from Rahnella sp. WP5

Subject, 985 a.a., excinuclease ABC subunit B from Sinorhizobium meliloti 1021

 Score =  766 bits (1979), Expect = 0.0
 Identities = 391/665 (58%), Positives = 488/665 (73%), Gaps = 4/665 (0%)

Query: 6   KLHSEFKPSGDQPEAIRRLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLAP 65
           ++ S+++P+GDQP AI  L +GL +G  +Q LLGVTGSGKTFT+A VI    RP ++LAP
Sbjct: 159 RMQSDYEPAGDQPTAIADLVDGLTSGERNQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 218

Query: 66  NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125
           NKTLAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP SDT+IEK++S+NE I++MR S
Sbjct: 219 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMRHS 278

Query: 126 ATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYARND 185
           AT++LLER DVI+VASVS IYG+G  + Y  M   ++ G  +DQR +L  L   QY R D
Sbjct: 279 ATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKRRD 338

Query: 186 QAFQRSTFRVRGEVIDVFPAESDDLALRIELFDQEVERLSLFDPLTGQVQHEVPRFTIYP 245
             FQR +FRVRG+ I++FPA  +D A RI +F  E++ ++ FDPLTGQ   ++    IY 
Sbjct: 339 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLKSVKIYA 398

Query: 246 KTHYVTPRERIVQAMEEIKVELADRRKVLLANNKLLEEQRISQRTQFDLEMMNELGYCSG 305
            +HYVTPR  +  A++ IK E++ R   L    +LLE QR+ QRT++D+EM+   G C G
Sbjct: 399 NSHYVTPRPTLNAAIKAIKEEMSQRLAELERAGRLLEAQRLEQRTRYDIEMLEATGSCQG 458

Query: 306 IENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEYG 365
           IENYSRYL+GR PGEPPPTLF+Y+P + L+ +DESHVTIPQIGGMY+GD  RK TL EYG
Sbjct: 459 IENYSRYLTGRRPGEPPPTLFEYIPDNALIFIDESHVTIPQIGGMYRGDFRRKATLAEYG 518

Query: 366 FRLPSALDNRPMRFEEFEALAPQSIYVSATPGKYELEKSGDDVVDQVVRPTGLLDPIIEV 425
           FRLPS +DNRP+RFEE++A+ P +I VSATPG +E+E++G    +QV+RPTGL+DP +EV
Sbjct: 519 FRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQAGGVFAEQVIRPTGLIDPPVEV 578

Query: 426 RPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVER 485
           R   TQVDD+L EIR+  A   R LVT LTKRMAEDLTEYL E G +VRY+HSDIDT+ER
Sbjct: 579 RSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 638

Query: 486 VEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545
           +EIIRDLRLG FDVLVGINLLREGLD+PE   VAILDADKEGFLRSE SLIQTIGRAARN
Sbjct: 639 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 698

Query: 546 LNGKAILYGDKITNSMARAIEETERRRAKQEAYNLENGITPMGLNKKISDILQLGQPKTK 605
           ++GK ILY D IT SM RA+EET RRR KQ AYN E+GITP  +  KISDIL     +  
Sbjct: 699 VDGKVILYADTITGSMQRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDH 758

Query: 606 KNKDKRDAEAAQTFKS---LTPKALEQRIKELESKMYAHAQNLEFEEAANTRDELHALRE 662
              D     A + F     L    L+  +  LE +M   A +L+FE+AA  RDE+  L+ 
Sbjct: 759 VRAD-ISGVAGKGFADGGHLVGNNLQAHLNALEKQMRDAAADLDFEKAARLRDEIKRLKA 817

Query: 663 QFIAI 667
             +A+
Sbjct: 818 AELAV 822