Pairwise Alignments

Query, 668 a.a., excinuclease ABC subunit B from Rahnella sp. WP5

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  774 bits (1998), Expect = 0.0
 Identities = 384/657 (58%), Positives = 492/657 (74%), Gaps = 4/657 (0%)

Query: 4   EFKLHSEFKPSGDQPEAIRRLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVL 63
           EF+L S+++P+GDQP+AI  L  GL      Q LLGVTGSGKTFT+A VIA++ RPT++L
Sbjct: 37  EFRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLIL 96

Query: 64  APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123
           APNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEKD+S+NE I++MR
Sbjct: 97  APNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMR 156

Query: 124 LSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYAR 183
            +AT+ALLERRDVI+VASVS IYG+G  + Y +M++ +  G  + +  +L+ L ELQ+ R
Sbjct: 157 HAATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFTR 216

Query: 184 NDQAFQRSTFRVRGEVIDVFPAESDDLALRIELFDQEVERLSLFDPLTGQVQHEVPRFTI 243
           ND AF R  FRVRG+ +++FPA  +D A R+ L+  E+E +  FDPLTG++   +   T+
Sbjct: 217 NDIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVTV 276

Query: 244 YPKTHYVTPRERIVQAMEEIKVELADRRKVLLANNKLLEEQRISQRTQFDLEMMNELGYC 303
           YP +H+VTPR  + QA+  IK EL +         K+LE QR+ QRT FDLEM+   G+C
Sbjct: 277 YPASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGHC 336

Query: 304 SGIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVE 363
             IENYSR+L+GR PG+PPPTLF+YLP D LL VDESHV +PQIGGM++GD +RK  L E
Sbjct: 337 KSIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLAE 396

Query: 364 YGFRLPSALDNRPMRFEEFEALAPQSIYVSATPGKYELEKSGDDVVDQVVRPTGLLDPII 423
           +GFRLPS +DNRP++FEE++ + P SI+VSATPG++ELE++G  V +QV+RPTGL+DP+ 
Sbjct: 397 FGFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPVC 456

Query: 424 EVRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTV 483
            +RPV  QVDDLL E++   A  ERVLVTTLTKRM+EDLTEYL E G +VRY+HSDI+T+
Sbjct: 457 IIRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIETL 516

Query: 484 ERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543
           ER+EIIRDLRLG FDVLVGINLLREGLD+PE +LVAILDADKEGFLRS  SLIQTIGRAA
Sbjct: 517 ERIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAA 576

Query: 544 RNLNGKAILYGDKITNSMARAIEETERRRAKQEAYNLENGITPMGLNKKISDILQLGQPK 603
           RN+ G+ ILY DK+T+S+  AIEET RRR +Q+ YN  +GITP  +  +ISD+L     K
Sbjct: 577 RNVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVLSSVYEK 636

Query: 604 TKKNKDKRDAEAAQTFKSLTPKALEQRIKELESKMYAHAQNLEFEEAANTRDELHAL 660
                             L  K+L + + +L+ +M A A +LEFEEA   RDE+  L
Sbjct: 637 DYVTV----TTGVSGDNQLVGKSLREHLADLDKRMRAAAADLEFEEAGRLRDEIRRL 689