Pairwise Alignments

Query, 668 a.a., excinuclease ABC subunit B from Rahnella sp. WP5

Subject, 698 a.a., Probable excinuclease ABC (subunit B-helicase) UvrB from Mycobacterium tuberculosis H37Rv

 Score =  731 bits (1887), Expect = 0.0
 Identities = 382/683 (55%), Positives = 492/683 (72%), Gaps = 25/683 (3%)

Query: 5   FKLHSEFKPSGDQPEAIRRLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVLA 64
           F++ S   P+GDQP AI  LE  +  G     LLG TG+GK+ T A +I  L RPT+V+A
Sbjct: 7   FEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMA 66

Query: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
           PNKTLAAQL  E++E  P NAVEYFVSYYDYYQPEAY+  +DT+IEKD+S+N+ +E++R 
Sbjct: 67  PNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRH 126

Query: 125 SATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYARN 184
           SAT ALL RRDV+VVASVS IYGLG P  YL   + L  G  + +  +LR L ++QY RN
Sbjct: 127 SATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRN 186

Query: 185 DQAFQRSTFRVRGEVIDVFPAESDDLALRIELFDQEVERLSLFDPLTGQVQHEVPRFTIY 244
           D +F R +FRVRG+ +++ P+  ++LA+RIE F  E+E L    PLTG+V  +V    I+
Sbjct: 187 DMSFTRGSFRVRGDTVEIIPSY-EELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIF 245

Query: 245 PKTHYVTPRERIVQAMEEIKVELADRRKVLLANNKLLEEQRISQRTQFDLEMMNELGYCS 304
           P THYV   ER+  A+  I+ ELA+R   L +  KLLE QR+  RT +D+EMM ++G+CS
Sbjct: 246 PATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCS 305

Query: 305 GIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLVEY 364
           GIENYSR++ GRGPG PP TL DY P D LL++DESHVT+PQIGGMY+GD SRK  LVEY
Sbjct: 306 GIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEY 365

Query: 365 GFRLPSALDNRPMRFEEFEALAPQSIYVSATPGKYELEKSGDDVVDQVVRPTGLLDPIIE 424
           GFRLPSA DNRP+ +EEF     Q++Y+SATPG YEL ++G + V+QV+RPTGL+DP + 
Sbjct: 366 GFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVV 425

Query: 425 VRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDTVE 484
           V+P   Q+DDL+ EIR R   ++RVLVTTLTK+MAEDLT+YL E G +VRYLHS++DT+ 
Sbjct: 426 VKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLR 485

Query: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           RVE++R LRLG++DVLVGINLLREGLD+PEVSLVAILDADKEGFLRS RSLIQTIGRAAR
Sbjct: 486 RVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAAR 545

Query: 545 NLNGKAILYGDKITNSMARAIEETERRRAKQEAYNLENGITPMGLNKKISDIL------- 597
           N++G+  +Y DKIT+SM  AI+ETERRRAKQ AYN  NGI P  L KKI+DIL       
Sbjct: 546 NVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREA 605

Query: 598 ------QLGQPKTKKNKDKR------DAEAAQTFK----SLTPKA-LEQRIKELESKMYA 640
                 ++G      ++ +R       A +A  F+    S  P+A L   IK+L ++M A
Sbjct: 606 DDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMA 665

Query: 641 HAQNLEFEEAANTRDELHALREQ 663
            A++L+FE AA  RDE+  L+ +
Sbjct: 666 AARDLQFELAARFRDEIADLKRE 688