Pairwise Alignments

Query, 590 a.a., SmdA family multidrug ABC transporter permease/ATP-binding protein from Rahnella sp. WP5

Subject, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

 Score =  259 bits (663), Expect = 2e-73
 Identities = 169/498 (33%), Positives = 273/498 (54%), Gaps = 12/498 (2%)

Query: 82  FGASY---QLAVELRQDFFRQLSRQHPAFYLRHRTGDLIARATNDVDRVVFAAGEGVLTL 138
           +G SY   ++ +++RQ  F    R   ++     +G+LI+R T D +++  A+G  ++T+
Sbjct: 108 YGISYISARMIMDMRQQVFEHYLRLPVSYIDAESSGNLISRVTFDTEQIARASGSALITI 167

Query: 139 VDSLVMGLAVLIVMATQISWELTLLSLVPMPVMAIIIKRYGDQLHSRFKTAQAAFSSLND 198
           V   +  + +L VM    SW+L+L  L+  P++ ++I     +     K  Q A   +  
Sbjct: 168 VRDGITVIGMLGVMFYN-SWKLSLCILIVGPLIGLVIAVVSRKFRKVSKQIQTAMGGVTS 226

Query: 199 QAQESLTSIRMIKAFGLENHQSSQFADVAADTGAKNMRVARVDARFDPTIYVSIGMANLL 258
             ++ +   + +  FG +  +S +FA V  D  ++ M++A   A   P + V   +A   
Sbjct: 227 VTEQMIKGHKNVLVFGGQQAESQRFAKVNDDNRSRTMKLALAQAISQPLVMVIGSLALAF 286

Query: 259 AIGGGSWMVVNGHLTLGELTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRSLLQEA 318
            +   S   +   LT G   + +  +  M+ P+ +L  +    +RG AA S I ++L   
Sbjct: 287 VLYASSLESMRADLTAGTFATILAAMLAMLQPIKSLTRVNAEFQRGIAACSTIFAVLDTP 346

Query: 319 PAVVDGTTPLPAGRATLEAHINDFHYPENSHAALTTVTFSLQPGQMLGLCGPTGSGKSTL 378
             V +GT         L     +F Y      AL  V F + PG+ L L G +GSGKST+
Sbjct: 347 AEVDNGTFETKRVEGRLSFDKVNFRYNNQEGLALKEVDFQVNPGETLALVGRSGSGKSTI 406

Query: 379 LSLLQRQF-DVTDGDVCYHGLSLKEIQLDDWRARLAVVSQTPFLFSDTVAQNIALGRP-D 436
            SL+ R + D+  GD+    +SL++ +L   R ++A+VSQ   L +DT+A NIA   P +
Sbjct: 407 ASLITRFYSDLDSGDIRLDDVSLRDYKLAALRRQVALVSQQVTLINDTIAANIAYAYPGE 466

Query: 437 ATQEEIEEAARLASVHDDILRLPQGYETEVGERGVMLSGGQKQRISIARALLLKAEILIL 496
            T+E+I +AA+LA+  + I  +P+G  T+VGE GVMLSGGQ+QRI+IARA+L  A ILIL
Sbjct: 467 VTEEQIIDAAKLANAWEFICNMPEGIYTQVGENGVMLSGGQRQRIAIARAILRDAPILIL 526

Query: 497 DDALSAVDGRTEHQI---LHNLRQWGSDRTVIISAHRLSALTEASEILVFSQGSISQRGN 553
           D+A SA+D  +E  I   L NLRQ   +RT I+ AHRLS +  A++ILV  QG + +RG 
Sbjct: 527 DEATSALDTESEKAIQTGLDNLRQ---NRTSIVIAHRLSTVENANQILVVDQGKVVERGT 583

Query: 554 HDQLAAEAGWYRDMFRYQ 571
           H +L A+ G Y ++++ Q
Sbjct: 584 HSELLAKQGIYYNLYQMQ 601