Pairwise Alignments

Query, 590 a.a., SmdA family multidrug ABC transporter permease/ATP-binding protein from Rahnella sp. WP5

Subject, 592 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA from Marinobacter adhaerens HP15

 Score =  261 bits (666), Expect = 7e-74
 Identities = 174/522 (33%), Positives = 275/522 (52%), Gaps = 22/522 (4%)

Query: 56  LFAWLGLMLGTAVVVYLLRYVWRVLLFGASYQLAVELRQDFFRQLSRQHPAFYLRHRTGD 115
           +FA+ GL  GT +  Y + YV R        Q+   LR D F +L      ++  +  G 
Sbjct: 82  VFAFRGL--GTFLSQYFISYVGR--------QVINALRNDVFDRLMTLPSRYFDDNAAGR 131

Query: 116 LIARATNDVDRVVFAAGEGV-LTLVDSLVMGLAVLIVMATQISWELTLLSLVPMPVMAII 174
           L+++ T +V++V  A    V +TL + L   +  L+      +W+LTL+ L   P++A +
Sbjct: 132 LVSKLTFNVEQVAEATTNAVTITLREGLT--IVGLLGYMFYTNWKLTLIFLAVGPLIAAV 189

Query: 175 IKRYGDQLHSRFKTAQAAFSSLNDQAQESLTSIRMIKAFGLENHQSSQFADVAADTGAKN 234
           +     +     K  Q +   +   A ES+T  R+++ FG E+++  +F +V      ++
Sbjct: 190 VSYASKRFRKISKRIQGSMGDITHVASESITGYRVVRTFGGEDYERQRFQEVNDKNLKQS 249

Query: 235 MRVARVDARFDPTIYVSIGMANLLAIGGGSWMV----VNGHLTLGELTSFVMYLGLMIWP 290
           +++A   A   P I V +     +AI G  WM+    + G ++ G+L +F+     M  P
Sbjct: 250 LKMASTQAISVPVIQVLVA----IAIAGLVWMMLAPEIRGEMSTGQLVAFITAATTMAKP 305

Query: 291 MLALAWMFNIVERGSAAYSRIRSLLQEAPAVVDGTTPLPAGRATLEAHINDFHYPENSHA 350
           +  +  +   +++G AA   +   + E+P    GT         +E     F Y +    
Sbjct: 306 IRQVTSVHAKIQKGVAAAYDVFETIDESPEQDPGTYSPDRVEGDIEFDEVAFRYRDQLDN 365

Query: 351 ALTTVTFSLQPGQMLGLCGPTGSGKSTLLSLLQRQFDVTDGDVCYHGLSLKEIQLDDWRA 410
            L  ++ S+  GQ + L G +GSGKSTL+SLL R ++ T GD+   G SL++  L   R 
Sbjct: 366 VLEGISLSIPAGQSVALVGRSGSGKSTLVSLLPRFYEYTGGDIRIDGHSLRDFSLKALRK 425

Query: 411 RLAVVSQTPFLFSDTVAQNIALGR-PDATQEEIEEAARLASVHDDILRLPQGYETEVGER 469
           ++A+V+Q   LF+DT+A NIA G   D T EEI EAA  A   + I R+P+G +T +G+ 
Sbjct: 426 QIALVTQNVVLFNDTIAANIAYGALRDCTPEEIREAAAKAHALEFIDRMPEGLDTMIGDN 485

Query: 470 GVMLSGGQKQRISIARALLLKAEILILDDALSAVDGRTEHQILHNLRQWGSDRTVIISAH 529
           GVMLSGGQ+QR++IARALL  A ILILD+A SA+D  +E  I   L      RT ++ AH
Sbjct: 486 GVMLSGGQRQRLAIARALLKNAPILILDEATSALDTESERHIQEALETVMQGRTTLVIAH 545

Query: 530 RLSALTEASEILVFSQGSISQRGNHDQLAAEAGWYRDMFRYQ 571
           RLS + +A  ILV   G I++ G HD+L A  G Y  + + Q
Sbjct: 546 RLSTIEKADRILVMDNGRIAESGRHDELLAAGGAYAQLHQMQ 587