Pairwise Alignments

Query, 319 a.a., cytochrome o ubiquinol oxidase subunit II from Rahnella sp. WP5

Subject, 386 a.a., cytochrome o ubiquinol oxidase subunit II from Sinorhizobium meliloti 1021

 Score =  276 bits (706), Expect = 6e-79
 Identities = 136/299 (45%), Positives = 192/299 (64%), Gaps = 20/299 (6%)

Query: 3   LKKYNKSIGMLSLFASAVMLSGCNTALMDPKGAIGLEQRTLILTAIGLMLIVVIPVIIMA 62
           L K+++ + +L LF   ++++GC+  +M P G I  +QR LI+ +  LML++++PV+ + 
Sbjct: 4   LLKFSRRLAVLPLF---LVMAGCDMVVMSPSGDIAAQQRDLIVISTILMLLIIVPVVFLT 60

Query: 63  FAFAWKYRASNTKAKYSPDWSHSNKIEAVVWTVPIIIIAILATITWKTTHSLDPFKP--- 119
             FAW+YR SNT A Y P+W HS  +E V+W+ P+ II  L  ITW +TH LDP++P   
Sbjct: 61  LFFAWRYRRSNTSATYDPEWHHSTALEVVIWSAPLAIIIALGAITWISTHKLDPYRPLDR 120

Query: 120 ------IVTDQKPMTVEVVSLDWKWLFIYPEQGIATVNELVIPKDVPVQFKVTSDSVMNS 173
                 I  D +P+TVEVV+LDWKWLF YP+ G+A VNEL  P DVP+ FK+T+ SVMNS
Sbjct: 121 LDAERAIPADARPLTVEVVALDWKWLFFYPDLGVAAVNELAAPVDVPIHFKITASSVMNS 180

Query: 174 FFIPQLGGQIYAMAGMQTQLHLIANEAGTYKGISASFSGRGFSGMKFNTIATPTRADFDT 233
           F+IP L GQIYAM GM+T+LH + N+ G Y+G SA++SG GFS M+F       R  FD 
Sbjct: 181 FYIPALAGQIYAMPGMETKLHAVINKPGEYEGFSANYSGDGFSHMRFKFHGL-DRQGFDD 239

Query: 234 WVAKVKSAPNQLATTDDFNKLAAQSIDNPVEYFSVAKPGLFKEII------GKYSMHDM 286
           WVA+VK+    L   D + KL   S   PV Y++  + GL++ I+      GK  M +M
Sbjct: 240 WVARVKAQGTAL-NRDAYLKLEKPSEREPVRYYAAVEDGLYRAILNLCVTPGKMCMEEM 297