Pairwise Alignments

Query, 1152 a.a., exodeoxyribonuclease V subunit gamma from Rahnella sp. WP5

Subject, 1148 a.a., exonuclease V subunit gamma from Vibrio cholerae E7946 ATCC 55056

 Score =  602 bits (1553), Expect = e-176
 Identities = 428/1184 (36%), Positives = 610/1184 (51%), Gaps = 131/1184 (11%)

Query: 7    VLHGNHSETLRDVLVSWMAAHPLS-PLENEVILVQSNGINQWLKLALARDVTDGGCGIAA 65
            V H N  ETL+ +LV  +   PL  P   E ILVQS G++QWLK+ALA ++     G+AA
Sbjct: 4    VYHSNQVETLKILLVHLIKNEPLDDPFIPESILVQSPGMSQWLKMALASEL-----GVAA 58

Query: 66   ALDIKLPARFFWQVYRAVLGKEQVPESSPFDRPLLTWRLIRLLPELLAEPVFAPLARFLK 125
             L+  LPA F WQ++  VL    VP+ S F++  ++WRL+ LLP+LL    F PL R+L+
Sbjct: 59   NLEFPLPATFIWQMFTQVL--PDVPQRSAFNKEAMSWRLMELLPKLLDRTEFQPLQRYLQ 116

Query: 126  DDGDMRKLHQLAQRLADLFDQYQVYRADWLEDWGNGLDVLRTSRKGSEPLPENLLWQPQL 185
            DD D  K  QLA+++AD+FD Y VYR DW+  W  G DV+         + +   WQP L
Sbjct: 117  DDEDDSKRFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVE--------IADQHPWQPIL 168

Query: 186  WRALLADVPENERNT-SRAALHQRFLHYAQTIPEDQRPAGLPARLVVFGISSLPQQSLEV 244
            WR L A   +   +   RA L+QRF+   Q    D   +  P RL +FGIS+LP + ++ 
Sbjct: 169  WRELYAYTHKQGHSIYHRANLYQRFIE--QLASGDFDRSTWPKRLFIFGISALPPRYIDA 226

Query: 245  LAVLGRWTHIFMCVHNPCEHDWSDIIADKDLLR-AERIRQLRKPGMPQVIAEDEL----- 298
            L  +G    + + + NPC+H W DI   K L R A + R++ +    QV    E+     
Sbjct: 227  LRAMGEHIDVHLMLTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKG 286

Query: 299  -------------HQHAHPLLAAWGKQGRDYIGLLNEYDNHESYAAQLAPVIPRIDLFTS 345
                         H   + LLA+ GK GRD + LL + D  E            ++LF  
Sbjct: 287  DVENYLQESMHLSHAVGNSLLASMGKMGRDNLYLLAQNDQSE------------LELFIE 334

Query: 346  NGTDTLLHQLQEDILQLRPLAETIDEWPAADVQH-------DDSLRFFITHSAQREVEVL 398
               D+LLH +Q DIL L+   E  D+   A   H       DDSL+  + HS  REVEVL
Sbjct: 335  IQRDSLLHHIQADILHLQ---EHQDDAKFASSGHKPSIAAQDDSLQIALCHSPIREVEVL 391

Query: 399  HDRLLAALAADPTLKARDIIVMVPDINGYAPHIQAVFGLMERSDPRYIPFTVADQGPRQN 458
            HDRLLA    DP+LK RD+IVMVPDIN YAP+IQAVFG       R+IPF+++D+   Q 
Sbjct: 392  HDRLLAEFERDPSLKPRDVIVMVPDINAYAPYIQAVFG--NAPGERFIPFSISDRSADQE 449

Query: 459  NPLLGALESLLELPQSRFAVSDLLDLLDVPSVRQRFGIEEEQLPLLHRWIRAANVRWGLH 518
            +P+L A   LL LPQSR   S+LL+LL+ P++  RF I+EE+     RW+  A +RWGL+
Sbjct: 450  SPILTAFLQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEEAGIRWGLN 509

Query: 519  AEQRQSLELPLSPEQNSWFFGLQRMLLGYAVGS-------GEAWKNIEPLDEIGGLDAAL 571
            ++     ELP S EQN+W FG++RMLLGYA+ +       G  W  + P +++ G+ A L
Sbjct: 510  SDTGAEFELPAS-EQNTWQFGIERMLLGYAMPAEAGLYELGGQW--LAPYNQVQGMSAEL 566

Query: 572  IGPLSHLLNCLDDTWRQLREPAPPQEWGRRLRHILSQYFSED-DGEDGFILVRLHGELEI 630
             G L+H +  L +   QL +    ++W   L  +L + FS D  GE    L  +   L  
Sbjct: 567  AGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNELLERCFSVDLQGE--LALKTIRDSLVN 624

Query: 631  WLEACESVDLQAELPLSVVRDHWLAQFDQSGLTQPFFGGAVTFATLMPMRAIPFRHVHLL 690
              +       Q  +  +++R     +   + ++Q F  G V F TLMPMR+IPFR V LL
Sbjct: 625  LKQQLADAGYQQAVSPAIIRQVLTNKLSGTRISQRFLAGQVNFCTLMPMRSIPFRRVCLL 684

Query: 691  GMNDGDYPRNRVPMDFDLMGRDYRPGDRSRREDDRYLFLEALLSARERLHISWVGRSIHD 750
            GMNDG YP N +   FDL     R GDRSRRE+ RYLFLEALLSA+E+L+IS+VGRSI D
Sbjct: 685  GMNDGVYPPNEMVEGFDLRNVQRRVGDRSRREESRYLFLEALLSAKEQLYISYVGRSIQD 744

Query: 751  NTERPPSVLVAQLRDHLAAGW---------KAQNGEDLLHALTTEHRLQPFNRDYFSQGS 801
            N+ER PSVLV++L ++    +            +G  L+  LTT++ + PF+   F  G 
Sbjct: 745  NSERVPSVLVSELLEYCEQNYCLAGDENLESDDSGRRLVEHLTTQYPMVPFSPQAFIAG- 803

Query: 802  PLFSYAHEW--RAGLEAEAAAVAAQPLQ----PVEQEGALTLRQLSDFLSDPVRSFFRQR 855
               S+A EW   A  + +++A    PL      V     L L +L  F   PV  FF++R
Sbjct: 804  ---SFAREWLPAARRQGQSSADFLTPLSDYLLEVSWPMELDLVELQRFWRLPVEYFFKRR 860

Query: 856  LNIYFELEDPGSEDQEPFDINALENWRLQDELIRAQKWALEAGVSRQDVLRQQLERIERR 915
            L + FE      ED EPF ++ L  ++L+DEL+     A   G  R  V+ Q  ++   +
Sbjct: 861  LKVSFEPPLAVLEDDEPFALDGLSAYQLRDELVE-NLLACRDGAERDQVVAQFAKQQRAQ 919

Query: 916  GELAPGEFAAVLSDDLAEPMDTLFASYQQVLDAWPQPLANEAVE------DKTGGVTFSD 969
            G+L    F  +   +LA+      A  +++     QPL +E ++      D    V    
Sbjct: 920  GKLPVAAFGDL---ELAQSAQQALALAEKIGFLCHQPLEDEEIDLRLQPFDDGREVLLRG 976

Query: 970  WLSELRANAAGGRARVVLESTGIIKDR--AYRFDRLLPYWVAHLAGHLDGQPMHTFIVS- 1026
            WL             V    +G+++ R  A R + LL  W+ HL     G+ + T ++  
Sbjct: 977  WL-------------VKRYQSGLVRARSGAIRSEDLLAAWIDHLCLAASGKAVTTHLIGY 1023

Query: 1027 --KNGTAE--LPPLEIA-YARELWDTLIETWKIGQLRPLPLAVKTAFVWLKKEGTAHSAT 1081
              K G     LPPL  A  A+ L   L+  +  G  +PL    KTA   + + G +    
Sbjct: 1024 ERKEGVQHQMLPPLNDAQQAKTLLSELVALFCQGMNQPLAYFPKTALACV-EAGFSRGKW 1082

Query: 1082 DSDAWLAARDSYENHDPANMKFGERDSNAYLARAWPDFAALWSD 1125
              D   + +   +  + +    GE   N Y+AR WP     WSD
Sbjct: 1083 QEDEEKSYKKMADTFNDSFYIKGE-GGNRYIARIWPQ----WSD 1121