Pairwise Alignments

Query, 1152 a.a., exodeoxyribonuclease V subunit gamma from Rahnella sp. WP5

Subject, 1192 a.a., exodeoxyribonuclease V, gamma subunit (RefSeq) from Shewanella loihica PV-4

 Score =  503 bits (1296), Expect = e-146
 Identities = 406/1232 (32%), Positives = 605/1232 (49%), Gaps = 153/1232 (12%)

Query: 5    LMVLHGNHSETLRDVLVSWMAAHPL---SPLENEVILVQSNGINQWLKLALARDVTDGGC 61
            L ++  N  E L ++L + +   PL   SPL NE ILVQS G++ WL+LA+A+       
Sbjct: 2    LYLVQSNRMEALAELLANELQT-PLPGQSPLSNEQILVQSPGMSTWLRLAIAKQNQ---- 56

Query: 62   GIAAALDIKLPARFFWQVYRAVLGKEQVPESSPFDRPLLTWRLIRLLPELLAEPVFAPLA 121
             +AAAL+  LP+ F WQ+   +L    VP+ + F +P +TW+L+ LLP LL++ VFAPLA
Sbjct: 57   -VAAALEFPLPSSFIWQLCHQLL--PDVPKENAFTKPAMTWKLMELLPGLLSQEVFAPLA 113

Query: 122  RFLKDDGDMR--------KLHQLAQRLADLFDQYQVYRADWLEDWGNGLDVLRTSRKGSE 173
             +LKDD  +         KL QL  ++AD+FDQY VYR DW+  W  G D L    +   
Sbjct: 114  NYLKDDAILTDSAAPHSLKLFQLCSQIADIFDQYLVYRPDWILAWEQGEDRLPPKER--- 170

Query: 174  PLPENLLWQPQLWRALLADVPE--NERNTSRAALHQRFLHYAQTIPEDQRPAGLPARLVV 231
            PL  N  WQ  LWR L+       N+    RA LHQ           D   + LP RL V
Sbjct: 171  PLDANQQWQSLLWRELIHYNHHTLNQSRYHRANLHQALFDALSDPLCDL--SKLPPRLFV 228

Query: 232  FGISSLPQQSLEVLAVLGRWTHIFMCVHNPCEHDWSDIIADKDLLRAERIRQLRKPGMPQ 291
            FGISS+  Q+LEVL  L +   + M   +PC+H W DI+  K  LRA    Q        
Sbjct: 229  FGISSMAPQTLEVLYFLAKRIDVVMLNLSPCQHYWGDIVDPK--LRARMALQYGDKQQLA 286

Query: 292  VIAEDELHQHAHPLLAAWGKQGRDYIGLLNEYDNHESYAAQLAPVIPRIDLFTSNGTDTL 351
            +  E +L +  +PLLA  GK GR+ + L+ E   +++            + +   G+++L
Sbjct: 287  IDWESKL-EVGNPLLANNGKMGRELLDLILELPENDTNF--------NFECYQDPGSNSL 337

Query: 352  LHQLQEDILQLRPLAETIDEWPAADVQ-----------HDDSLRFFITHSAQREVEVLHD 400
            LH +Q+DIL+L    ET+   P A++             DDSL     HS  RE+E LHD
Sbjct: 338  LHGVQQDILELCTRGETLG--PDAELYLTTKGRRVLKIDDDSLTLRSCHSPLRELETLHD 395

Query: 401  RLLAALAADPTLKARDIIVMVPDINGYAPHIQAVFGLMERSDPRYIPFTVADQGPRQNNP 460
             LL  L+    L  +DI+VM+PD+  YAP+I AVF   +R D  +IP+ +AD+G  Q +P
Sbjct: 396  HLLEQLSQSDGLAPKDIVVMMPDVAAYAPYIDAVFA-SKRGD-HFIPYAIADRGAAQESP 453

Query: 461  LLGALESLLELPQSRFAVSDLLDLLDVPSVRQRFGIEEEQLPLLHRWIRAANVRWGLHAE 520
            L+ +   LL L +SRFA++D+L +L+VP+V +RF ++++ L L+ RW+  A VRWG    
Sbjct: 454  LINSFLHLLGLNKSRFALTDILGILEVPAVMRRFDLDDDDLLLIRRWLEQAGVRWGRDQH 513

Query: 521  QRQSLELPLSPEQNSWFFGLQRMLLGYAVGSGEA--WKNIEPLDEIGGLDAALIGPLSHL 578
             RQ+ +LP + E NSW FG++R++LGY+  S EA  + +   L  + G  A  +G L + 
Sbjct: 514  SRQAQQLP-AFEHNSWAFGIKRLILGYSF-SDEAPIYHDSLALPGVEGQSAQALGKLLNF 571

Query: 579  LNCLDDTWRQLREPAPPQEWGRRLRHILSQYFSEDDGEDGFILVRLHGELEIWLEACESV 638
            +  +D+    L E  P      +L+ ++  ++   D E       L     +  E   + 
Sbjct: 572  IEAIDEFNLALGEHCPLSVRITQLQTLVETFYDCVDEELSQKQELLQAITRL-SEELTAT 630

Query: 639  DLQAELPLSVVRDHWLAQFDQSGLTQPFFGGAVTFATLMPMRAIPFRHVHLLGMNDGDYP 698
              Q+EL L V+++ +     +S + Q +  G+V F TLMPMR+IPF  V LLGMNDG YP
Sbjct: 631  QYQSELELEVMQNWFTRHLTESRVGQRYLAGSVNFCTLMPMRSIPFMLVCLLGMNDGVYP 690

Query: 699  RNRVPMDFDLMGRD-YRPGDRSRREDDRYLFLEALLSARERLHISWVGRSIHDNTERPPS 757
            R + P+ FDL+ ++  R GDRSRR DDRYLFLEALLSARE+L+IS++G S  DN+ER PS
Sbjct: 691  RVQHPVGFDLVAQEGPRKGDRSRRLDDRYLFLEALLSAREQLYISYIGHSERDNSERIPS 750

Query: 758  VLVAQLRDHLAAGW---------KAQNGED------------LLHALTTEHRLQPFNRDY 796
            +LV++L ++    +         K  N +D            +L  L     LQPF+   
Sbjct: 751  MLVSELIEYCQLCYLPENCAHLLKGSNADDTSTADIAKIELAILDQLIITMPLQPFDERL 810

Query: 797  F----SQGSPL-----------FSYAHEW---------------RAGLEAEAAAVAAQPL 826
            +    S+G+              SY+ +W               +    A A      PL
Sbjct: 811  YLADESEGAECEGAKSEPRRLRQSYSEQWCPRALTEQDKQHDGEQGAKPASAGHFIEAPL 870

Query: 827  QPVEQEG---ALTLRQLSDFLSDPVRSFFRQRLNIYFELEDPGSEDQEPFDINALENWRL 883
              V  E     L L  L  F  +P + FF + L +   L     E+ EPF +N L  ++L
Sbjct: 871  SLVADEDKGEPLELSALIRFYRNPAQYFFNRTLKLDLNLSIQADENDEPFALNPLSRYQL 930

Query: 884  QDELIRAQKWALEAGVSRQDVLRQQLERIERRGELAPGEFAAVLSDDLAEPMDTLF---- 939
            Q  LI     A+++G  R     + LER+   G+L    F  +L       +  L     
Sbjct: 931  QSTLIED---AVKSGDERPS--SELLERLRLSGQLPLAPFDDLLLKQYQHDIRALVGRTL 985

Query: 940  -----ASYQQVLDAWPQPLANEAVEDKTGGVTFSDWLSELRANAAGGR--ARVVLES--- 989
                 +S+ Q +D      A  A+  +  GV+ +  L   R   A  R   RV L     
Sbjct: 986  YLQGESSHTQDIDLLLSDSAATALVGRIDGVS-AKGLVNYRPGTANARDLIRVYLRHLCL 1044

Query: 990  TGIIKDRAYRFDRLLPYWVAHLAGHLDGQPMHTFIVSKNGTAELPPLEIAYARELWDTLI 1049
               + D +         W  H +  LD    H F       A + P +      LW    
Sbjct: 1045 NASVSDNSDVERHEATPWQRH-SYLLDIGHFHAF-------APITPEQALNQLSLW---A 1093

Query: 1050 ETWKIGQLRPLPLAVKTAFVWLKKEGTAHSATDSDAWLAARDSYENHDPANMKFGERDSN 1109
            E +  GQ +PLP   +TAF +++ EG        +  +AA+  + + + +N+  G+    
Sbjct: 1094 EHYHQGQSQPLPFMPRTAFAYVEAEG-----EHIEKLIAAQPQWLD-EQSNLGEGQEAHY 1147

Query: 1110 AYLARAWPDFAALWSDGEFARLADVLLAPLIN 1141
              L     DF    S+  F  +A  LL+P+++
Sbjct: 1148 QRLFTFPDDF----SEAGFGTIASTLLSPMLS 1175