Pairwise Alignments

Query, 1227 a.a., exodeoxyribonuclease V subunit beta from Rahnella sp. WP5

Subject, 1223 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella loihica PV-4

 Score =  609 bits (1571), Expect = e-178
 Identities = 452/1248 (36%), Positives = 655/1248 (52%), Gaps = 106/1248 (8%)

Query: 10   LNVLNFPLTGSRLIEASAGTGKTFTIAALYVRLVIGHGGDNAFSRSLTPPEILVVTFTDA 69
            L+ L+ PL+G+RLIEASAGTGKT+TIA LYVRL++G    ++    L+  +ILVVTFT+A
Sbjct: 6    LDPLSLPLSGTRLIEASAGTGKTYTIAGLYVRLLLG----DSQRAPLSCEQILVVTFTNA 61

Query: 70   ATKELRDRIRARLSQAAGYFLGNPDAENDSDEFLQNLRAEYTPEQWPGCARKLQLAAEWM 129
            AT+ELRDRIR ++  A   FLG    E D D  +  L +E  PE      ++L LA + +
Sbjct: 62   ATQELRDRIRKKIQLAYRAFLG---MEVD-DPLINTLYSEAEPEARSQALKRLDLALKSL 117

Query: 130  DESAVSTIHGWCNRMLGEHAFDSDSLFTQTLETDQTELLMNVVRDYWRSFYFPLGEQEIR 189
            DE+A+ TIHG+C R+L + AF+S  LF      D +E L + VRD+WR   +PL     +
Sbjct: 118  DEAAIFTIHGFCQRILSDMAFESSLLFESEFTLDDSEYLHHAVRDFWREACYPLPGYLAQ 177

Query: 190  MLRGWWRSPEDLHRSVMPLLEYAGELGSDQTPAEVCETVNNLKAAELAALKQDWPQWTQE 249
            ++   +  P+ L + + PLL  A +     TP    +    L  + L+ L+  WP+    
Sbjct: 178  IISNKFSDPDGLTKQLRPLLG-ANQASVSPTPEAFSQVAERLSQS-LSRLRLIWPRERDA 235

Query: 250  LRTMLEGAVAAKAVNGKIQARYFNPWLDKLHA----WATSDEIIPDLKT-GWTRLTPAGL 304
               +L+         GK    Y  P L+ L A    WA     +PD K  G   L    L
Sbjct: 236  TLELLKALPLNGTRFGKKDQGY--PKLETLFAAMDNWAAQPLSLPDNKVLGALALGGLKL 293

Query: 305  DEGWKQGVAPVHSAISAMETLKTRLESLPDARSGLLQHACRWIKNRFDLEQQKRAQMGFN 364
            ++G   G +P       +  ++   E++       L  A   IK RF  ++Q +     +
Sbjct: 294  NKG---GESPTPEQAPLLAHIERVTETIDTLVPSFLYGARDGIKARFAAQKQLKNLRTPD 350

Query: 365  DLLTRLDAALS--SDNGARLAEIIRTQFPVAMIDEFQDTDPLQYRIFDAVYRVAENAPEQ 422
            DLL  L  ALS  +D    LA  I  +FP+A+IDEFQDTDPLQY+IF ++Y+  + + + 
Sbjct: 351  DLLIALADALSEETDQEQALARAIAKRFPIALIDEFQDTDPLQYQIFSSIYQGQQVSTDS 410

Query: 423  --GLILIGDPKQAIYAFRGADIYTYLRARRDTGGRHYTLATNFRSTRAMVASVNQVFELA 480
              GL++IGDPKQAIYAFRGADI+TY+ AR  T   HY+L TN+RS++AM+ +VNQ+F  +
Sbjct: 411  DLGLLMIGDPKQAIYAFRGADIHTYIHARGQTEN-HYSLDTNYRSSQAMIEAVNQLFSRS 469

Query: 481  ENRKSGEGAFLFRRGAENQVPFLPVEAKGRA--DTLVIDDAEAAALTL-WYPENQAEVLP 537
            ++    +            +PF  V+A   A    LV    + +AL L    E+    L 
Sbjct: 470  DDPFISQA-----------IPFELVKASPEAAEKRLVEKVPQTSALRLKLLGEDPNAGLN 518

Query: 538  KNQYVQLMADGCATEIVRLLRLGQQGSAGFGLPGETLKPVMPGDIAVLVNTGREATAVRV 597
            K      +A+  A EI RLL   Q+G        +  KP+   DIAVLV    EA  ++ 
Sbjct: 519  KASARSQLAEDAANEIARLLNEAQRGECL-----KQDKPLKAKDIAVLVRDRNEAAYIKT 573

Query: 598  ALSKRGVRSVYLSDKESIFESAQAGELQYWLAACAAPENDRLLRAALATPSLNLSWEALD 657
            ALS RG+ +V+LS ++S+F++  A EL   L A A P+++R LR+A+AT  L    +A+ 
Sbjct: 574  ALSSRGIGAVFLS-RDSVFDTLVAKELALVLLAIANPKDERALRSAMATALLGYDAQAIH 632

Query: 658  RLNQDENEWERYVQQFQALRTCWRKQGILPMLRRLMWEFDVPRRLLGRGD-ERALTDLLH 716
              N DE+  ++ ++ F  L   W K+GI+P +  L  +  +  RLL   + +R LTD  H
Sbjct: 633  GFNLDEDVRQQQLEAFDNLHQTWLKRGIMPCMMALAADTRLIERLLTADEGQRRLTDFRH 692

Query: 717  LSELLQQASVQLDGEHALIRYLAEQCQDEHQGGDARKLRLESDAELVKVVTVHKSKGLEY 776
            L ELLQQ +++LDG  AL+ +  +Q   E    +  +LRLES+  LV++VT+HKSKGLEY
Sbjct: 693  LGELLQQKAMELDGISALLNWY-QQTLIEVSSTEEAQLRLESEQNLVQIVTIHKSKGLEY 751

Query: 777  PLVFLPFACAFRAVKKQDSPLKWHTAEGELEVALSATDEQLVQADRERLGEDLRKFYVAM 836
            P+ FLPF    R  +++ +P+ +H  +  L   +  ++E   +   E L EDLR  YVA+
Sbjct: 752  PICFLPFVSLARDSRRKPAPMLYHEQDA-LVWDIDQSEEGWAKYKAENLAEDLRLLYVAL 810

Query: 837  TRSRYALWLGMAPLKEFEK----------SASGYLFH-GGDAIDADALPASLQALETDTI 885
            TR   A +  +A    F K          +A GYL     +A +   + A+ QAL ++ I
Sbjct: 811  TRPVLACYCYVANHSRFTKRDGISSQLFETAIGYLLGIETNACEFADIQAAAQALASEAI 870

Query: 886  RAWPLPVTDGAIYRSEQL----LPELGPRPPLRTHKGPRWWVSSFSGLQIAPAGTYMVPE 941
                L  +D      + +      +L PRP  R H+ P W V S+SGL    A   + P 
Sbjct: 871  SV-DLVESDAPKLDFDPIDTADAVKLAPRPLNRRHEIP-WRVGSYSGLVKHSAHEQISPG 928

Query: 942  TLNREPRGEIESAAQDSYLEDQKVFVEDKEPVPGLLQPMTGENLYAFPRGPAPGNFLHGL 1001
             +  E   E+E  A DS    +                      ++F RG   G+FLH +
Sbjct: 929  -MGDEAFPELEQLAPDSEQLSR----------------------FSFERGANAGSFLHWV 965

Query: 1002 LEWAGDEGFAALAKDPAKIADQVARRCNTRGWE-KWIVPLSGWLTALLTQPLALPDGETF 1060
            LE                + D++ +     G + +W   L  W   LL  PL   DG+  
Sbjct: 966  LEQID------FTLADTSLGDELPKAMERFGIDSEWQDMLHAWYLDLLHTPL---DGDGL 1016

Query: 1061 TLAELPPYQ--VEMEFWFSLTKVSTVRLDKLVQQYTLEGAERAPLLAEDLNGMLKGFIDL 1118
             LA L   Q  VEMEF+  + K+    L++L+ QY    A    L  E L GMLKGFIDL
Sbjct: 1017 RLASLSQAQKLVEMEFYMPIGKLDAPGLNQLLSQYGYSAA----LNFETLEGMLKGFIDL 1072

Query: 1119 VFEHDGRYYVLDYKSNWLGDDASGYDQENMTQSMREHRYDLQFSLYLFALHRLLKSRIPD 1178
             FE+ G++Y+ DYKSN LGD  S Y++  M +++  H YDLQ+ +Y  ALHR LK R+P 
Sbjct: 1073 TFEYQGKFYIADYKSNHLGDHLSHYEKPAMLRAIAGHHYDLQYIIYSLALHRYLKLRLPG 1132

Query: 1179 YDYDRHIGGAVYLFLRGSHA--PGNGVCVQRPDKALMEQLDALFSGTE 1224
            Y YD+H+GG  YLFLRG  A  P  GV   +P  AL++ LD L S  E
Sbjct: 1133 YQYDQHVGGCYYLFLRGMSADSPSTGVYYDKPPLALIQALDTLLSEAE 1180