Pairwise Alignments

Query, 684 a.a., exodeoxyribonuclease V subunit alpha from Rahnella sp. WP5

Subject, 662 a.a., exodeoxyribonuclease V, alpha subunit (RefSeq) from Shewanella loihica PV-4

 Score =  365 bits (936), Expect = e-105
 Identities = 264/704 (37%), Positives = 377/704 (53%), Gaps = 72/704 (10%)

Query: 3   INSREDIAQLLASWVECGWLRELDRALVTFLAKEAPDAHPLLLLATALTSYQLGRGHVCL 62
           I   + ++QLL  W + G L  LDR     +     D   L  L  AL S QL + H CL
Sbjct: 2   IQLAQPLSQLLKHWQQEGLLTPLDRHFALQMQALHSDGDDLFTLICALLSRQLSQQHTCL 61

Query: 63  DLQATLDDSAFSLSLPPEGDHADGAVIRPAAVLDDLSLQEWLAALVHPTLVGHHEGNSPL 122
            L     ++      P          + P A+   L+  + ++           E N+PL
Sbjct: 62  PLTQIDKNNPLHEQQPQ-----CQLELTPQALAGQLTQYQAISP-------ADGELNTPL 109

Query: 123 VLTGQRLYLRRYWQYEQNVRAAIEQRLARSALHTLPVESLRAPLTALFPADAKSDIANWQ 182
           +L G RLYL+RY+Q+E  V   +  RL +      P + +   L  LF   A+    +WQ
Sbjct: 110 ILDGDRLYLQRYYQFETQVAERLT-RLNQPITVAAP-DKVACILNILFAGQAEKP--DWQ 165

Query: 183 KLACALAAGSAFSIITGGPGTGKTTTVVRLLALLQTLALEENGQPLRIRLAAPTGKAAAR 242
           K+A A A     ++ITGGPGTGKTTTV +LL LL    LE   Q L I+L APTGKAAAR
Sbjct: 166 KVATATAFSQKLAVITGGPGTGKTTTVTKLLLLL---CLE---QQLTIKLVAPTGKAAAR 219

Query: 243 LNESIAGAVSKL--DLSALGNGNAVRE--SINTDVVTLHRLLGSRPDTRHFRHHPGNPLM 298
           L+ESI  + ++L  +L+  G+   + +   +  +  TLHRLLG  P +  FRHH  NPL 
Sbjct: 220 LSESIKASKARLAQELAPYGDELDLEQLKQVPEEAATLHRLLGVIPGSHRFRHHKDNPLR 279

Query: 299 LDVLVVDEASMVDLEMMAALLAALPEQARLILLGDKDQLASVEAGALLSELC------QR 352
           LD+L++DEASMVDL MM  LL ALPE  RLILLGD+DQLASVEAGA+L+++C        
Sbjct: 280 LDLLILDEASMVDLPMMHKLLEALPEHTRLILLGDQDQLASVEAGAVLADICAGLKQTSS 339

Query: 353 ANGGHYLPHTRD---WLQSVTGEQVPDSLVDPQGTAMDQAVVMLRHSYRFDAQSGIGQLA 409
              G  + ++++    L  +T E +  + +D +  A+  ++ ML HS+RF   +GIGQLA
Sbjct: 340 QESGWRMRYSQEKAALLSQLTNEDL-SNYIDAR-PALGDSLAMLMHSHRFKGDAGIGQLA 397

Query: 410 EAVNDGDVKALKQVWKHGYADLAQL--TLSADDDAELRDWVVKGGAKQFPTAARREGVEP 467
            AVN  D+  +  VW+ GY +L+ L   LS   +A L+  + +   K            P
Sbjct: 398 GAVNRRDLTGILSVWQKGYDELSWLEHQLSPQGNAGLKALMAQSVDK----------YRP 447

Query: 468 PVGYQHYLNVMIQARPADNEPPEA--FNRWAARVLLAYSQFQLLCALRGGRWGVEELNQR 525
            +    +L    QA+  D E  +    +  A +++  ++ F++LCA+R G +GVE +N  
Sbjct: 448 YLDLVGHLANKEQAQEVDKEADQQLDLDEIANQIITRFNNFRILCAMRAGEYGVEGINAA 507

Query: 526 IADILRKEGLLKASIGWYPGRPVLVTRNDYSQRLMNGDIGITLE---IPHRLADGTVVPT 582
           +   L+   L++ S  +Y GRP+++  NDY+  L NGDIG+ L      HR         
Sbjct: 508 VTQALKDAQLIQPSSEFYAGRPIIIQSNDYNLGLFNGDIGVILPGHGPTHR--------- 558

Query: 583 LRVAFLAGDGTQDIRWVMPGRLQAVETVFAMTVHKSQGSEFTHTALLLPENLS----PIL 638
           L   F+  DG+  +  V+P RL + ET +AMTVHKSQGSEF   A +LP   S     +L
Sbjct: 559 LMAYFVQADGS--LLKVLPARLPSHETCYAMTVHKSQGSEFQQVAFVLPPRPSVAQRQLL 616

Query: 639 TRELIYTGITRARHWFSLGCVGGMNAVLPDAVKRRVLRASGLIE 682
           T+EL+YT ITRA+  FS  C+G   AV   A  +  LRASGL +
Sbjct: 617 TKELVYTAITRAKGHFS--CLGS-QAVFEAACSQVTLRASGLAQ 657