Pairwise Alignments

Query, 577 a.a., sensor histidine kinase from Rahnella sp. WP5

Subject, 560 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  245 bits (625), Expect = 4e-69
 Identities = 166/580 (28%), Positives = 303/580 (52%), Gaps = 41/580 (7%)

Query: 7   MLLAVFDRAALMLICLFFLTRTPLFRKLLHKENETHTPLELTAVTAIFSLFAIFGTLSGI 66
           ++L +  + +L L+ ++ +++TPLF+  L  E     P ++  +  +FS F I  T  G 
Sbjct: 3   LILLLTQQMSLYLVIVYLVSKTPLFK--LFAETSPRLPHKIF-IYLVFSSFCIMATYFGE 59

Query: 67  NVEGSLINVRTIAIMSGGILFGPWVGIITGLISGTHRFLIDIHGPTSVPCLITS----IT 122
              G++ N R +  + GG+L GP  G + GL  G HR+   + G T + C I++    ++
Sbjct: 60  QTSGAIANTRAMGAVLGGLLGGPVTGFLVGLTGGLHRY--SMGGFTDLACAISTTLEGLS 117

Query: 123 AGFLSGYINKKVKKSLHWK--VGILGGMLCETLTMILILLMARPFSLGLDIVMNIAAPLI 180
           AG +S Y+ +  K  L +   +  L     E + M LILL+A PF    ++V  IA P++
Sbjct: 118 AGMISFYLRRAGKSELIYNPLLVCLVTFYAEIMQMSLILLIACPFDAAWELVRQIAPPML 177

Query: 181 LGASSIGLIVLLVQSVEDEKEV---IAARQARLALDIANKTLPYFRNIDGRNIEGRNINA 237
           L  +SIG   L +  + D+K +   +++  +  AL IA +++          +  +  N 
Sbjct: 178 L-VNSIGA-ALFMSMIRDQKTMFDKLSSSFSTKALKIAERSV---------GLLSKGFNE 226

Query: 238 ESLASICSIIRDDIDADAVAITDTKNILAYVGVGAEEYNIGHETLSEMTKATLESGEITV 297
           ES   +  I+ ++ +  AVAITD + +LA++G+GA+ +  G    S++T   +   ++  
Sbjct: 227 ESSGKVAQIVIEETNVGAVAITDREKLLAFIGIGADHHIPGTPISSQITLEAINQNKVMF 286

Query: 298 RNNDEMHRTPQIHSL------IIIPLWEKGEVTGSLKIYYCDPHRITYSLKVMAIGLSQI 351
            +  E+  +  I S       ++IPL    EV G++K+Y           + +  G++++
Sbjct: 287 ADGVEIPYSCSISSQCKLGSSLVIPLRSDTEVIGTIKLYEPKNKLFLNINRTLGEGIARL 346

Query: 352 MSTQMEVSRTEQLREMANKAEMRALQSKINPHFLFNALNAISSSIRARPDVARQLIINLS 411
           +S Q+   R EQ + +  +AE++ LQ+++NPHFLFNALN IS+ I+  PD+++QL+  LS
Sbjct: 347 LSNQILYGRFEQQQNLLTQAELKLLQAQVNPHFLFNALNTISAIIKRDPDMSKQLLQQLS 406

Query: 412 RYLRYNLELNDELIDLRKELHQVQDYIAIEQARFGSKLTVIYDIDDDI-SVKIPSLLIQP 470
           ++LR NL+    L+ L  EL  +  Y+ IE+ARF +KL V   I + +   K+P+  +QP
Sbjct: 407 QFLRINLKRTTGLVTLGDELDHIASYLTIEKARFINKLQVNIAIPESLYHCKVPAFTLQP 466

Query: 471 LVENAIVHGIQKCSGKGVVVISVKHQADGIRVSVKDTGHGINQETIDRVARNEMPGNKIG 530
           ++ENA+ HG      +G + ++ +     + + V D   G+ Q + D           +G
Sbjct: 467 IIENAVKHGTSHMIDQGQIKVTGRLDEHVLALEVIDNA-GLYQPSTD--------SEGLG 517

Query: 531 LLNVHHRVSLLYGQGLSIRRLEPGTDISFVITHAPAKVTQ 570
           +  VH R+  L+G+   ++      + + VI   P + T+
Sbjct: 518 MNLVHKRIQNLFGEQYGLQVECEPDEYTKVIIRLPIEKTE 557