Pairwise Alignments

Query, 228 a.a., ABC transporter permease subunit from Rahnella sp. WP5

Subject, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  210 bits (535), Expect = 2e-59
 Identities = 106/240 (44%), Positives = 158/240 (65%), Gaps = 20/240 (8%)

Query: 2   LYGYSQVIIQGTLVTLELAISSVILALVIGLIGAGGKLSKNRIVSGFFGCYTTLIRGVPD 61
           L GY   I++G L+T+E+A+ S++LA+++G++GA  K++  R        YTT+IRG+PD
Sbjct: 4   LQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPD 63

Query: 62  LVLMLLIFYGLQIALNS--------VTESLGLTQ------------IDIDPMSAGIITLG 101
           LVLM+LIF+G QI LN+        + + L                +DI P  AG++T+G
Sbjct: 64  LVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIG 123

Query: 102 FIYGAYFTETFRGAFMAVPRGQIEAATAFGFSGSQIFRRILFPAMMRFALPGIANNWQVI 161
           FI+GAY  ETFRGA +AV +G++EAA A+G S +  FRRIL P M+R A+PG  NNW V+
Sbjct: 124 FIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVL 183

Query: 162 LKATALVSLLGLNDVVKATQLAGKGTYQPFYFAIVAGVVYLVFTTLSNGVLVWLDRRYSL 221
           LK TALVS++GL D+V+ + LA   T  PF F +   +++L FT++S G+L  L+R++S+
Sbjct: 184 LKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKFSI 243