Pairwise Alignments

Query, 228 a.a., ABC transporter permease subunit from Rahnella sp. WP5

Subject, 232 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  176 bits (445), Expect = 4e-49
 Identities = 90/221 (40%), Positives = 139/221 (62%), Gaps = 2/221 (0%)

Query: 4   GYSQVIIQGTLVTLELAISSVILALVIGLIGAGGKLSKNRIVSGFFGCYTTLIRGVPDLV 63
           GY  ++I G  +T++L + +V   LV+GLIG   KLS+N +       YT L RG+P+L+
Sbjct: 5   GYGDLLITGAAMTIKLVLGAVSFGLVLGLIGTTLKLSRNALARAVGNAYTDLFRGLPELL 64

Query: 64  LMLLIFYGLQIALN-SVTESLGL-TQIDIDPMSAGIITLGFIYGAYFTETFRGAFMAVPR 121
           ++L+++YG +  +   V + L L   + I P   G+++LG I+GAY +E FRGA +A+PR
Sbjct: 65  VVLIMYYGAEALVRWLVNDVLALDVAVSISPYVGGVLSLGLIFGAYASEVFRGAILAIPR 124

Query: 122 GQIEAATAFGFSGSQIFRRILFPAMMRFALPGIANNWQVILKATALVSLLGLNDVVKATQ 181
           G +EAA AFG      +RRI+ P + R ALPG+ N + V LK TALVS +GLN+++++  
Sbjct: 125 GHVEAARAFGMGPVLTYRRIILPQVWRVALPGLGNLFLVSLKDTALVSAIGLNELMRSAN 184

Query: 182 LAGKGTYQPFYFAIVAGVVYLVFTTLSNGVLVWLDRRYSLG 222
           +AG+ T   F F + A  +YL  T +S  V+  L+RR + G
Sbjct: 185 IAGRSTRDYFTFLLAAAFLYLAMTMVSMAVIALLERRANRG 225