Pairwise Alignments

Query, 237 a.a., ABC transporter permease from Rahnella sp. WP5

Subject, 229 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  157 bits (396), Expect = 2e-43
 Identities = 95/208 (45%), Positives = 129/208 (62%), Gaps = 2/208 (0%)

Query: 22  GLAITLWLLISSVVIGGLLAVPMAVGRVSSNKFLRYPIWLYTYIFRGTPLYVQLLVFYSG 81
           G  +TL L+  SV+ G ++AVP+ + R S +  +R   + Y + FRGTPL VQL + Y G
Sbjct: 16  GAWLTLQLVGVSVIAGLIVAVPLGIARSSRHLAVRALPYGYIFFFRGTPLLVQLFLVYYG 75

Query: 82  MYSLEIVRGTDFLNAFFRSGLNCTILALTLNTCAYTTEIFAGAIRAVPHGEIEAANAYGF 141
           M   ++VR +  L  + R    C I+ +TL+T AY  EI  GAI+ VPHGEIEAA A G 
Sbjct: 76  MAQFDVVRQSA-LWPYLRDPYWCAIITMTLHTAAYIAEIIRGAIQNVPHGEIEAARALGM 134

Query: 142 SRFKLYTCIILPSALRTALPAYSNEVILMLHSTALAFTATVPDVLKIARDINSATYQPFY 201
           SR +    IILP A R  LPAYSNEVILML ++ALA T T+ ++  +AR I + TY    
Sbjct: 135 SRSQALLHIILPRATRIGLPAYSNEVILMLKASALASTITLLELTGMARKIAARTYLHEE 194

Query: 202 AFGIAAVIYLCVSFVLIGLFRKAEKRWL 229
            F  A +IYL ++F+L+  F+  E RWL
Sbjct: 195 MFLTAGLIYLLIAFILMQGFKLLE-RWL 221