Pairwise Alignments

Query, 953 a.a., two-component system sensor histidine kinase RcsC from Rahnella sp. WP5

Subject, 1042 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  215 bits (547), Expect = 1e-59
 Identities = 171/524 (32%), Positives = 262/524 (50%), Gaps = 45/524 (8%)

Query: 459 SLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQGLPQGVDRLVTAMNNS 518
           +L E    AE A+++K  FLA +SHE+RTP+ G+IG L LL    L     R V   + S
Sbjct: 393 ALSEAREKAEVAAKTKEDFLACMSHEIRTPMNGVIGILGLLGETQLSPMQKRYVDVASAS 452

Query: 519 SALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGNYLPLVVKKHLGLYCFIEHN 578
           +  LL +++DILDFSKIES + +IE  EF   E++     +    + ++HL L+  I   
Sbjct: 453 ADSLLSLLNDILDFSKIESGKFEIEAIEFDLVELLDLFVQSVSLKLEERHLPLFVDITQL 512

Query: 579 VPLSFNGDPVRLQQVISNILNNAIKFTDTGCIVLNVRTCGN-----YLEFQVRDTGVGIP 633
                 GDP RL+Q++ N++ NAIKFT+ G I L +    +      L  +V DTG+GI 
Sbjct: 513 QYRYVVGDPSRLRQILVNLVGNAIKFTEEGWIALRLSNRLSESGEVLLSCEVEDTGIGIA 572

Query: 634 EREITRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIEVESEPGLGSSFTVRIP 693
           + ++  LF+PF QV +   R F GTGLGL+I ++L  LM G+I+V S+  +GS F+  + 
Sbjct: 573 KEKLAMLFNPFIQVDSSTTRMFGGTGLGLSIAKRLCELMQGEIKVRSQQEVGSIFSFTLT 632

Query: 694 LYNATFPSGEPLDNWQ----DKTVWLDVRNAYLESYLMQLMRYHGANVQRCEPELQSQRE 749
              A     + + +W+     + V L  +    E  L +L+   GA V   E E      
Sbjct: 633 QQLA---DSDKMIDWRAGLSPERVTLMGQLGAFERMLGELLTSWGARVSYLEEEDAILET 689

Query: 750 DVLITDTPLIHKG---ELAAQIEFSIGHIGPPVETRP----GYW-----------IHSTS 791
           DV+I       +    EL A  E    H   P  TR      YW           +    
Sbjct: 690 DVIIYSFAPRREAFVEELNAWRELVGQHADRP-NTRVLPLLSYWQQTEFEKQDARVPHLG 748

Query: 792 TPLEITALLNRIYRLETTAEEGGSATPEAAVAQDYSDIT-LLVVDDHPINRRLLADQLGT 850
            PL I  L+  +   +   EE      E  V     D   +L+V+D+ +N+ +    L  
Sbjct: 749 RPLNIRQLIRALS--DRADEEMIEPVIEPIVEPSMPDKPKVLLVEDNKVNQMVALGMLHQ 806

Query: 851 MGYIVVTANDGIDAL---DAMRAHEIDIVLSDVNMPRLDGYGLTAKLRELGH------TL 901
           +G     A++G +AL    A++ +   ++L D  MP +DG+  TA +RE G        L
Sbjct: 807 LGVQADVASNGREALALLSALQGNPYQLILMDCLMPEMDGFQATAAIRE-GQGGSQFCAL 865

Query: 902 PVIGVTANALAEQRQRCLEAGMDNCLSKPVTLETLRDTL-RYYS 944
           P+I +TANA+   R+ C+ AGMD+ L+KP+ L  L++ L R++S
Sbjct: 866 PIIALTANAMKGDREHCIRAGMDDYLTKPLVLSVLKECLYRWFS 909