Pairwise Alignments

Query, 953 a.a., two-component system sensor histidine kinase RcsC from Rahnella sp. WP5

Subject, 1768 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  236 bits (602), Expect = 1e-65
 Identities = 178/552 (32%), Positives = 282/552 (51%), Gaps = 40/552 (7%)

Query: 426  NNIQLSFVHSRYRNEDVAICVLIDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHEL 485
            N   LS     YR+   A+  + D+S+   + E L +  + A+ AS++KS FLA +SHE+
Sbjct: 995  NMTGLSDKQGEYRS---AVLSMADISSLKLLSEELTQAKDVADAASKAKSDFLANMSHEI 1051

Query: 486  RTPLYGIIGNLDLLQTQGLPQGVDRLVTAMNNSSALLLKIISDILDFSKIESEQLKIEPQ 545
            RTP+  IIG   L     L +     V  ++ +S  LL II+DILDFSKIE+ +L IE  
Sbjct: 1052 RTPMNAIIGMSQLCLQTSLDKKQQNYVEKIDRASKSLLGIINDILDFSKIEAGKLDIEAV 1111

Query: 546  EFSCREVITHIAGNYLPLVVKKHLGLYCFIEHNVPLSFNGDPVRLQQVISNILNNAIKFT 605
             F    ++  ++  +      K L L   +  N+P    GDP+RL QV+ N++NNAIKFT
Sbjct: 1112 PFQLDTMLEDLSDMFSVKAADKQLELLFAVAPNIPRHLVGDPLRLSQVLINLMNNAIKFT 1171

Query: 606  DTGCIVLNVRTCGN-----YLEFQVRDTGVGIPEREITRLFDPFFQVGTGVQRHFQGTGL 660
            + G ++L++           L+F VRD G+G+ E +  +LF  F Q  +   R + GTGL
Sbjct: 1172 EQGEVMLSISQLVREDEEILLKFSVRDNGIGLTEEQRGKLFQSFSQADSSTTRKYGGTGL 1231

Query: 661  GLAICEKLINLMDGDIEVESEPGLGSS--FTVRIPLY-NATFPSGEPLDNWQ-----DKT 712
            GLAIC++L+ LM G+I VES+ G GS+  F+VR  +  N      + L+  +     D  
Sbjct: 1232 GLAICKQLVELMGGEIGVESQFGNGSTFFFSVRFKVADNQLIKVAQELEGMRILVADDNA 1291

Query: 713  VWLDVRNAYLES--YLMQLMRYHGANVQRCEP--------ELQSQREDVLITDTPLIHKG 762
               D+  + LES  + +  +R     + RC+         + +    D L T   L+ + 
Sbjct: 1292 TARDILRSTLESMGFTVDTVRSGAEALSRCQETDYGVALIDWRMPEMDGLETARRLLSER 1351

Query: 763  ELAAQIEFSIGHI-GPPVETRPGYWIHSTST-PLEITALLNRIYRLETTAEEG------- 813
                +      H  G  ++      I    T P+  + LL+ I  +    ++G       
Sbjct: 1352 TNPPKTLIVSAHADGDFIDKAEQAEISGYITKPISASRLLDGI--MSALGKQGAMPVRRK 1409

Query: 814  GSATPEAAVAQDYSDITLLVVDDHPINRRLLADQLGTMGYIVVTANDGIDALDAMRAHEI 873
            GS    A +AQ      +L+V+D+ +N+ + ++ L  +G I+  A +G  AL+ +     
Sbjct: 1410 GSEVSPALLAQ-LKGKRILLVEDNEMNQEVASEFLEQVGVILSIAENGQVALEKLAMQSF 1468

Query: 874  DIVLSDVNMPRLDGYGLTAKLRELGH--TLPVIGVTANALAEQRQRCLEAGMDNCLSKPV 931
            D+VL D  MP +DGY  TA+LR+      LPVI +TANA+A  ++ CL AGM++ ++KP+
Sbjct: 1469 DLVLMDCQMPVMDGYQATAELRKRPELADLPVIAMTANAMAGDKEMCLRAGMNDHIAKPI 1528

Query: 932  TLETLRDTLRYY 943
             +  L  TL  Y
Sbjct: 1529 EVSLLYKTLLEY 1540