Pairwise Alignments

Query, 953 a.a., two-component system sensor histidine kinase RcsC from Rahnella sp. WP5

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  222 bits (566), Expect = 1e-61
 Identities = 178/530 (33%), Positives = 277/530 (52%), Gaps = 41/530 (7%)

Query: 449  DVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLL-QTQGLPQG 507
            D++     E +L E    AE A+  KS FLA +SHE+RTP+  IIG L L  +TQ  PQ 
Sbjct: 697  DITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQ 756

Query: 508  VDRLVTAMNNSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGNYLPLVVKK 567
             D L  A   S+  LL+II+DILDFSKIE+ +L++E   F   +V+ H          +K
Sbjct: 757  ADYLDKA-GFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEK 815

Query: 568  HLGLYCFIEHNVPLSFNGDPVRLQQVISNILNNAIKFTDTGCIVLNVRTCGNY-----LE 622
             + L  +      L   GDP+RL QV+ N+L+NA+KFT +G I L     G       L+
Sbjct: 816  GVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDVGERDHRITLK 875

Query: 623  FQVRDTGVGIPEREITRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIEVESEP 682
            F VRDTG+GI + +   LFD F Q      R + GTGLGL+I + L+++M G ++V+SE 
Sbjct: 876  FWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSEL 935

Query: 683  GLGSSFTVRIPLYNATFPSGEPLDNWQD----KTVWLDVRNAYLESYLMQLMRYH----- 733
            G+GS+F+  I    A     +PL   +     KT+ +D     L+ Y   +  +H     
Sbjct: 936  GVGSTFSFTISFEIAEEAEVKPLIVPEVIGNLKTLVVDDNPTALQIYSTAMRDFHFDVDT 995

Query: 734  GANVQRCEPELQSQREDVLITD--TPLIHKGELAAQIEFSIGHIGPPVETRPGYWIHS-- 789
             +N      +L+ +  D+L+ D   P +   E+   ++  +      +E RP   + +  
Sbjct: 996  ASNGAEALYKLEHRPVDLLLLDWMMPEMDGVEVIKALDAMVA--DGRLEKRPVIIMMTAY 1053

Query: 790  TSTP-------LEITALLNRIYRLETTAEEGGSA-------TPEAAVAQDYSDI---TLL 832
             S P       L+I A+L + ++     +E  +A        P AA+  + +      +L
Sbjct: 1054 ASEPLKEDLDDLDIYAMLQKPFKASALFDEIIAAFIDKPKINPAAALPVEGNATGTGQIL 1113

Query: 833  VVDDHPINRRLLADQLGTMGYIVVTANDGIDALDAMRAHEIDIVLSDVNMPRLDGYGLTA 892
            +V+D+ IN+++  + L + GY V  A +G  ALD + A + D VL D+ MP +DG   T 
Sbjct: 1114 LVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDGLTATK 1173

Query: 893  KLRE--LGHTLPVIGVTANALAEQRQRCLEAGMDNCLSKPVTLETLRDTL 940
            +LR+      LPVI +TA+A++  R++ L AGM+  ++KP+ L  L DTL
Sbjct: 1174 ELRKRYTKEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTL 1223