Pairwise Alignments

Query, 587 a.a., DEAD/DEAH box helicase from Rahnella sp. WP5

Subject, 691 a.a., ATP-dependent DNA helicase RecG (RefSeq) from Shewanella loihica PV-4

 Score = 45.4 bits (106), Expect = 8e-09
 Identities = 97/442 (21%), Positives = 173/442 (39%), Gaps = 77/442 (17%)

Query: 10  QQDAVDATLRHFRQHDEPAVIVLPTGAGKSLV--IAELARVARGRVLVLAHVKELVAQNH 67
           Q+   D T    + H    ++    G+GK+LV  +A L  +  G  + +    EL+A+ H
Sbjct: 272 QRVVADITQDLDKAHPMMRLVQGDVGSGKTLVAALAALQAIESGYQVAMMAPTELLAEQH 331

Query: 68  SKYLSYGLEADIFAAGLNLKQSSGKVIFGSVQSVAPNLA--------------EFSGEFS 113
           +   +   E      G    +  GK    S+Q +    A              EF+   +
Sbjct: 332 ANNFAAWFEHLGLTVGWLAGKLKGKARAQSLQQIKSGEAHIVIGTHAIFQEQVEFN-RLA 390

Query: 114 LLIVDECHRISDDDNSQYQQIIGHLKAQNPRLRLLGLTATPYRLGKGWIYQYHHQGIVRG 173
           L+I+DE HR         ++  G  +  +P   ++  TATP               I R 
Sbjct: 391 LIIIDEQHRFGVHQRLGLREK-GIRQGFHPHQLIM--TATP---------------IPRT 432

Query: 174 DANSLFRDCIYELPLRYMIKNGFLVPPERLDMPVVSYDFSRLQASSNGLFSEADLNDELR 233
            A + + D    +           +PP R  +  V+   +R            ++ D +R
Sbjct: 433 LAMTAYADLDTSIIDE--------LPPGRTPVTTVAISDNR----------RGEVIDRVR 474

Query: 234 Q---QKRITPHIISQIIEFAQDRKGVMIFASTVEHAGEIFGLLPKGEAALISAQTHAVER 290
           Q   Q     + +  +IE ++    V+   +  + A E+  LLP+    L+  +    E+
Sbjct: 475 QAALQDGRQAYWVCTLIEESE----VLECQAAEDTAEELKQLLPELAIGLVHGRMKPAEK 530

Query: 291 DRLITAFKAQQLRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQ--QIVGRGLRLAPG 348
             ++ AFKA  ++ LV  +V+  G D P+  L+ I  P E + L Q  Q+ GR  R A  
Sbjct: 531 QAIMDAFKAGSIQLLVATTVIEVGVDVPNASLMIIENP-ERLGLAQLHQLRGRVGRGAVA 589

Query: 349 KTDCLILDYAGNPHDLFTPEVGSHKPAGD-----NKPVQVFCPA-------CGFANIFWG 396
            + C++L  A   H   T  +G  + + D      K +++  P         G A++   
Sbjct: 590 -SHCVLLYKAPLSHTA-TQRLGVLRDSNDGFVIAQKDLEIRGPGEVLGTKQTGIADMKIA 647

Query: 397 KTTEDGTVIEHFGRRCQGVLED 418
               D  +I H  +  Q V+++
Sbjct: 648 DLVRDQALIPHIQKLAQHVMQE 669